RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 LDLRAD1Q5T700 205 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 DRICH1Q6PGQ1 229 aaPredicted RBP19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 MICALCLQ6ZW33 695 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 TADA2BQ86TJ2 420 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 IFNLR1Q8IU57 520 aaPredicted RBP19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 KIAA0319LQ8IZA0 1049 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 AFG1LQ8WV93 481 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 SERPINB12Q96P63 405 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 CPXM1Q96SM3 734 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 ELOVL4Q9GZR5 314 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 ZNF148Q9UQR1 794 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 LRRD1A4D1F6 860 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 GH1P01241 217 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 KRT3P12035 628 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 ETS1P14921 441 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 ARF4P18085 180 aaPredicted RBP19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 PSMA2P25787 234 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 POLR2BP30876 1174 aaKnown RBP19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 LIG3P49916 1009 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 LMNB2Q03252 620 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 EAPPQ56P03 285 aaPredicted RBP19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 SMYD5Q6GMV2 418 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 GPRC5AQ8NFJ5 357 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 HAUS1Q96CS2 278 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 DDX56Q9NY93 547 aaKnown RBP19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 CTNNAL1Q9UBT7 734 aa19.55■□□□□ 0.72
PRPF40B-208ENST00000548436 C3orf70A6NLC5 250 aaPredicted RBP19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 MAGEB2O15479 319 aa19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 PSMC1P62191 440 aaKnown RBP19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 SLC25A11Q02978 314 aaKnown RBP19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 TNFAIP2Q03169 654 aa19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 PTPN11Q06124 597 aaPredicted RBP19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 IFT88Q13099 833 aa19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 ALLCQ8N6M5 410 aa19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 PPTC7Q8NI37 304 aa19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 PPM1EQ8WY54 764 aa19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 CHMP6Q96FZ7 201 aa19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 L3MBTL3Q96JM7 780 aaPredicted RBP19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 ZNF317Q96PQ6 595 aaPredicted RBP19.54■□□□□ 0.72
PRPF40B-208ENST00000548436 CILPO75339 1184 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 LRCH4O75427 683 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 KIAA0754O94854 1291 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 ERBB2P04626 1255 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 IL1R2P27930 398 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 ADCYAP1R1P41586 468 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 OASLQ15646 514 aaKnown RBP19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 SMTNL2Q2TAL5 461 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 YTHDF3Q7Z739 585 aaKnown RBP19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 XYLT1Q86Y38 959 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 RELL1Q8IUW5 271 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 SEC16BQ96JE7 1060 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 C16orf70Q9BSU1 422 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 INTS9Q9NV88 658 aaKnown RBP19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 FOXO6A8MYZ6 492 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 MICAL2O94851 1124 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 CREB1P16220 341 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 PSMC4P43686 418 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 ARSEP51690 589 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 DPY19L2Q6NUT2 758 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 TAOK1Q7L7X3 1001 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 POLNQ7Z5Q5 900 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 CPLX4Q7Z7G2 160 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 ZCCHC9Q8N567 271 aaKnown RBP19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 OTUD6BQ8N6M0 293 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 EMC1Q8N766 993 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 SLC10A4Q96EP9 437 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 TMEM176AQ96HP8 235 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 FAXDC2Q96IV6 333 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 C9orf72Q96LT7 481 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 KATNBL1Q9H079 304 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 ASB7Q9H672 318 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 ZWILCHQ9H900 591 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 VTA1Q9NP79 307 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 PNMA3Q9UL41 463 aa19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 DRG1Q9Y295 367 aaKnown RBP19.53■□□□□ 0.72
PRPF40B-208ENST00000548436 RBM47A0AV96 593 aaKnown RBP19.52■□□□□ 0.72
PRPF40B-208ENST00000548436 DNALI1O14645 258 aaPredicted RBP19.52■□□□□ 0.72
PRPF40B-208ENST00000548436 VCPP55072 806 aaKnown RBP19.52■□□□□ 0.72
PRPF40B-208ENST00000548436 CNGA2Q16280 664 aa19.52■□□□□ 0.72
PRPF40B-208ENST00000548436 KCNT1Q5JUK3 1230 aa19.52■□□□□ 0.72
PRPF40B-208ENST00000548436 MTHFD1LQ6UB35 978 aa19.52■□□□□ 0.72
PRPF40B-208ENST00000548436 ARHGEF2Q92974 986 aaKnown RBP19.52■□□□□ 0.72
PRPF40B-208ENST00000548436 PRMT1Q99873 361 aaKnown RBP19.52■□□□□ 0.72
PRPF40B-208ENST00000548436 VRTNQ9H8Y1 702 aa19.52■□□□□ 0.72
PRPF40B-208ENST00000548436 METTL5Q9NRN9 209 aaKnown RBP19.52■□□□□ 0.72
PRPF40B-208ENST00000548436 TCEA3O75764 348 aa19.52■□□□□ 0.71
PRPF40B-208ENST00000548436 CETPP11597 493 aa19.52■□□□□ 0.71
PRPF40B-208ENST00000548436 ATICP31939 592 aa19.52■□□□□ 0.71
PRPF40B-208ENST00000548436 GSCP56915 257 aaPredicted RBP19.52■□□□□ 0.71
PRPF40B-208ENST00000548436 MICALL1Q8N3F8 863 aa19.52■□□□□ 0.71
PRPF40B-208ENST00000548436 FNIP1Q8TF40 1166 aa19.52■□□□□ 0.71
PRPF40B-208ENST00000548436 RBM15Q96T37 977 aaKnown RBP eCLIP19.52■□□□□ 0.71
PRPF40B-208ENST00000548436 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.52■□□□□ 0.71
PRPF40B-208ENST00000548436 GPS1Q13098 491 aa19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 TMEM132DQ14C87 1099 aa19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 MAP1SQ66K74 1059 aaPredicted RBP19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 CCHCR1Q8TD31 782 aa19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 NLRP7Q8WX94 980 aa19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 NKD2Q969F2 451 aaPredicted RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms