RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ODF2LQ9ULJ1 636 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 TBX20Q9UMR3 447 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 CCL26Q9Y258 94 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 LNP1A1A4G5 178 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 PIRO00625 290 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 PPEF2O14830 753 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 F11P03951 625 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 PLA2G4BP0C869 781 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 ARSAP15289 507 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 GJA4P35212 333 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 IFNAR2P48551 515 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 MTF1Q14872 753 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 CYP2U1Q7Z449 544 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 KCNN1Q92952 543 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 HAPLN2Q9GZV7 340 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 ECT2Q9H8V3 914 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 DUS2Q9NX74 493 aaKnown RBP18.26■□□□□ 0.51
VPS29-204ENST00000548259 MAGED2Q9UNF1 606 aaPredicted RBP18.26■□□□□ 0.51
VPS29-204ENST00000548259 C2CD2Q9Y426 696 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 PCDHB6Q9Y5E3 794 aa18.26■□□□□ 0.51
VPS29-204ENST00000548259 NUP210Q8TEM1 1887 aaPredicted RBP18.25■□□□□ 0.51
VPS29-204ENST00000548259 FRYQ5TBA9 3013 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 A0A0B4J269 797 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 ANO9A1A5B4 782 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 OTOL1A6NHN0 477 aaPredicted RBP18.25■□□□□ 0.51
VPS29-204ENST00000548259 K7ENM7 598 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 PIGRP01833 764 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 U2AF2P26368 475 aaKnown RBP eCLIP18.25■□□□□ 0.512e-6■■□□□ 11.9
VPS29-204ENST00000548259 NMT1P30419 496 aaKnown RBP18.25■□□□□ 0.51
VPS29-204ENST00000548259 RPL10AP62906 217 aaKnown RBP18.25■□□□□ 0.51
VPS29-204ENST00000548259 FAM160A1Q05DH4 1040 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 COL9A2Q14055 689 aaPredicted RBP18.25■□□□□ 0.51
VPS29-204ENST00000548259 SV2CQ496J9 727 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 HYIQ5T013 277 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 TXNDC8Q6A555 127 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 TMEM130Q8N3G9 435 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 FSIP1Q8NA03 581 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 OSCP1Q8WVF1 389 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 CHFRQ96EP1 664 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 SLC32A1Q9H598 525 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 TMEM206Q9H813 350 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 CPSF3Q9UKF6 684 aaKnown RBP18.25■□□□□ 0.51
VPS29-204ENST00000548259 BAHCC1Q9P281 2608 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 SPAG17Q6Q759 2223 aa18.25■□□□□ 0.51
VPS29-204ENST00000548259 TRAV19A0A0A6YYK7 116 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 GIPC1O14908 333 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 DCLK1O15075 740 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 PRPF40AO75400 957 aaKnown RBP18.24■□□□□ 0.51
VPS29-204ENST00000548259 FAM13AO94988 1023 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 CKMP06732 381 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 NFICP08651 508 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 USP17L7P0C7H9 530 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 RDXP35241 583 aaKnown RBP18.24■□□□□ 0.51
VPS29-204ENST00000548259 SLC12A3P55017 1021 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 LMAN2Q12907 356 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 PMS2CLQ68D20 193 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 MYCT1Q8N699 235 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 TTC16Q8NEE8 873 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 ZNF560Q96MR9 790 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 MMTAG2Q9BU76 263 aaKnown RBP18.24■□□□□ 0.51
VPS29-204ENST00000548259 CCSER1Q9C0I3 900 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 FBRSL1Q9HCM7 1045 aaKnown RBP18.24■□□□□ 0.51
VPS29-204ENST00000548259 TRPC7Q9HCX4 862 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 DPP3Q9NY33 737 aa18.24■□□□□ 0.51
VPS29-204ENST00000548259 FAM189A1O60320 539 aa18.23■□□□□ 0.51
VPS29-204ENST00000548259 ALDH1A2O94788 518 aa18.23■□□□□ 0.51
VPS29-204ENST00000548259 HMGA1P17096 107 aaKnown RBP18.23■□□□□ 0.51
VPS29-204ENST00000548259 PNPLA4P41247 253 aa18.23■□□□□ 0.51
VPS29-204ENST00000548259 PDE6CP51160 858 aa18.23■□□□□ 0.51
VPS29-204ENST00000548259 ACAP1Q15027 740 aa18.23■□□□□ 0.51
VPS29-204ENST00000548259 WSCD1Q658N2 575 aa18.23■□□□□ 0.51
VPS29-204ENST00000548259 LMBRD2Q68DH5 695 aaPredicted RBP18.23■□□□□ 0.51
VPS29-204ENST00000548259 SLFN12LQ6IEE8 588 aa18.23■□□□□ 0.51
VPS29-204ENST00000548259 TMEM150AQ86TG1 271 aa18.23■□□□□ 0.51
VPS29-204ENST00000548259 ZSCAN31Q96LW9 406 aaPredicted RBP18.23■□□□□ 0.51
VPS29-204ENST00000548259 PARVGQ9HBI0 331 aa18.23■□□□□ 0.51
VPS29-204ENST00000548259 KIF3AQ9Y496 699 aa18.23■□□□□ 0.51
VPS29-204ENST00000548259 KPNA7A9QM74 516 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 SLC26A4O43511 780 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 KRT18P05783 430 aaKnown RBP18.22■□□□□ 0.51
VPS29-204ENST00000548259 DPP6P42658 865 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 TOB1P50616 345 aaPredicted RBP18.22■□□□□ 0.51
VPS29-204ENST00000548259 CDR1P51861 262 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 POU5F1Q01860 360 aaKnown RBP18.22■□□□□ 0.51
VPS29-204ENST00000548259 ST3GAL1Q11201 340 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 UAP1L1Q3KQV9 507 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 RILPL1Q5EBL4 403 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 ADALQ6DHV7 355 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 LRRTM3Q86VH5 581 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 TRMT2BQ96GJ1 504 aaKnown RBP18.22■□□□□ 0.51
VPS29-204ENST00000548259 SPACA7Q96KW9 195 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 PLIN2Q99541 437 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 NUSAP1Q9BXS6 441 aaKnown RBP18.22■□□□□ 0.51
VPS29-204ENST00000548259 ABCB6Q9NP58 842 aa18.22■□□□□ 0.51
VPS29-204ENST00000548259 POLR3BQ9NW08 1133 aaPredicted RBP18.22■□□□□ 0.51
VPS29-204ENST00000548259 TRAK2O60296 914 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 NFATC1O95644 943 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 DHPSP49366 369 aaPredicted RBP18.21■□□□□ 0.51
VPS29-204ENST00000548259 ACOT2P49753 483 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 KCNB1Q14721 858 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms