RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TBC1D1Q86TI0 1168 aaPredicted RBP8.15□□□□□ -1.1
VPS13D-211ENST00000543710 STARD8Q92502 1023 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 RMDN2Q96LZ7 410 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 CNBD2Q96M20 576 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 ASB2Q96Q27 587 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 SEC31BQ9NQW1 1179 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 DRG1Q9Y295 367 aaKnown RBP8.15□□□□□ -1.1
VPS13D-211ENST00000543710 FAM208AQ9UK61 1670 aaKnown RBP8.15□□□□□ -1.1
VPS13D-211ENST00000543710 CLIC2O15247 247 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 GLRA3O75311 464 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 ANP32DO95626 131 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 MYL2P10916 166 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 HOXB8P17481 243 aaPredicted RBP8.15□□□□□ -1.1
VPS13D-211ENST00000543710 EEF1B2P24534 225 aaKnown RBP8.15□□□□□ -1.1
VPS13D-211ENST00000543710 CASP2P42575 452 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 TMED1Q13445 227 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 CRYMQ14894 314 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 ACCSLQ4AC99 568 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 EFHC1Q5JVL4 640 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 SLC10A5Q5PT55 438 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 NYAP1Q6ZVC0 841 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 FAM83AQ86UY5 434 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 TTC30BQ8N4P2 665 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 SPATA4Q8NEY3 305 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 FLCNQ8NFG4 579 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 SH3RF3Q8TEJ3 882 aaPredicted RBP8.15□□□□□ -1.1
VPS13D-211ENST00000543710 ARNTL2Q8WYA1 636 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 NSL1Q96IY1 281 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 FAM167BQ9BTA0 163 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 MCOLN1Q9GZU1 580 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 KRT82Q9NSB4 513 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 MINPP1Q9UNW1 487 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 NFAT5O94916 1531 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 ADGRB1O14514 1584 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 MAGEB16A2A368 324 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 SPDYE2BA6NHP3 402 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 H7C0S8 307 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 ZNF263O14978 683 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 CYP27B1O15528 508 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 PLEKHA8P1O95397 391 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 ADH1AP07327 375 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 SPDYE6P0CI01 402 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 CCL5P13501 91 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 ZNF200P98182 395 aaPredicted RBP8.15□□□□□ -1.1
VPS13D-211ENST00000543710 DSG1Q02413 1049 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 PKP1Q13835 747 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 MAPRE1Q15691 268 aaKnown RBP8.15□□□□□ -1.1
VPS13D-211ENST00000543710 TAF2Q6P1X5 1199 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 OTOP3Q7RTS5 596 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 EFCAB3Q8N7B9 438 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 PNMA5Q96PV4 448 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 PUS3Q9BZE2 481 aaKnown RBP8.15□□□□□ -1.1
VPS13D-211ENST00000543710 SCN3BQ9NY72 215 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 RRN3Q9NYV6 651 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 VTI1BQ9UEU0 232 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 ANGPT2O15123 496 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 FBXO21O94952 628 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 LARGE1O95461 756 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 CSF1RP07333 972 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 DPP6P42658 865 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 SERPINB8P50452 374 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 HSD17B4P51659 736 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 CORO7P57737 925 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 TTC19Q6DKK2 380 aaPredicted RBP8.15□□□□□ -1.11
VPS13D-211ENST00000543710 NIPA1Q7RTP0 329 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 TRIM59Q8IWR1 403 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 TRIM48Q8IWZ4 208 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 ADGRF4Q8IZF3 695 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 USP38Q8NB14 1042 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 NCLNQ969V3 563 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 CENPTQ96BT3 561 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 ZFRQ96KR1 1074 aaKnown RBP8.15□□□□□ -1.11
VPS13D-211ENST00000543710 SLC9A2Q9UBY0 812 aa8.15□□□□□ -1.11
VPS13D-211ENST00000543710 FER1L4A9Z1Z3 1794 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 TBKBP1A7MCY6 615 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 KCNQ3O43525 872 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 NFIAQ12857 509 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 NR5A1Q13285 461 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 SF3B3Q15393 1217 aaKnown RBP8.14□□□□□ -1.11
VPS13D-211ENST00000543710 GRAMD1BQ3KR37 738 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 XKR3Q5GH77 459 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 SHC4Q6S5L8 630 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 GMCL1P1Q8NEA9 526 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 KIF12Q96FN5 646 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 TCF25Q9BQ70 676 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 NAT9Q9BTE0 207 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 PRRG3Q9BZD7 231 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 DCP1AQ9NPI6 582 aaPredicted RBP8.14□□□□□ -1.11
VPS13D-211ENST00000543710 FBXL5Q9UKA1 691 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 PIN4Q9Y237 131 aaKnown RBP8.14□□□□□ -1.11
VPS13D-211ENST00000543710 SESN1Q9Y6P5 492 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 IGSF9BQ9UPX0 1349 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 ALPPL2P10696 532 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 PCYT1AP49585 367 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 ZNF568Q3ZCX4 644 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 PRPF38BQ5VTL8 546 aaKnown RBP8.14□□□□□ -1.11
VPS13D-211ENST00000543710 MAGED4Q96JG8 741 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 MRPL46Q9H2W6 279 aaKnown RBP8.14□□□□□ -1.11
VPS13D-211ENST00000543710 HIPK3Q9H422 1215 aa8.14□□□□□ -1.11
VPS13D-211ENST00000543710 FAM124BQ9H5Z6 455 aaPredicted RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms