RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ETS2P15036 469 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 RFFLQ8WZ73 363 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 FUCA2Q9BTY2 467 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 GTSE1Q9NYZ3 720 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 BTN3A3O00478 584 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 UNC5CO95185 931 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 TMTC4Q5T4D3 741 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 KCTD1Q719H9 257 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 MTDHQ86UE4 582 aaKnown RBP13.84□□□□□ -0.19
USP40-208ENST00000450966 ARHGEF19Q8IW93 802 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 LRRN4CLQ8ND94 238 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 C19orf18Q8NEA5 215 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 ZNF507Q8TCN5 953 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 CEP95Q96GE4 821 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 PIK3C2BO00750 1634 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 MADDQ8WXG6 1647 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 TNPO2O14787 897 aaKnown RBP13.84□□□□□ -0.19
USP40-208ENST00000450966 RGS5O15539 181 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 CCNCP24863 283 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 NECTIN1Q15223 517 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 CCDC142Q17RM4 750 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 CCDC60Q8IWA6 550 aaPredicted RBP13.84□□□□□ -0.19
USP40-208ENST00000450966 FAM149B1Q96BN6 582 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 CEP170P1Q96L14 293 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 ALG13Q9NP73 1137 aaKnown RBP13.84□□□□□ -0.19
USP40-208ENST00000450966 EXOSC4Q9NPD3 245 aaKnown RBP13.84□□□□□ -0.19
USP40-208ENST00000450966 NEXMIFQ5QGS0 1516 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 ATP5BP06576 529 aaKnown RBP13.84□□□□□ -0.19
USP40-208ENST00000450966 PSMC6P62333 389 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 TRADDQ15628 312 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 JAMLQ86YT9 394 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 C4orf33Q8N1A6 199 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 KATNAL1Q9BW62 490 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 FAM8A1Q9UBU6 413 aa13.84□□□□□ -0.19
USP40-208ENST00000450966 CNOT7Q9UIV1 285 aaKnown RBP13.84□□□□□ -0.19
USP40-208ENST00000450966 KBTBD13C9JR72 458 aa13.83□□□□□ -0.19
USP40-208ENST00000450966 MED7O43513 233 aa13.83□□□□□ -0.19
USP40-208ENST00000450966 ARL6IP4Q66PJ3 421 aaKnown RBP13.83□□□□□ -0.19
USP40-208ENST00000450966 TRIM65Q6PJ69 517 aa13.83□□□□□ -0.19
USP40-208ENST00000450966 ATG14Q6ZNE5 492 aa13.83□□□□□ -0.19
USP40-208ENST00000450966 ARMCX2Q7L311 632 aa13.83□□□□□ -0.19
USP40-208ENST00000450966 MICALL2Q8IY33 904 aa13.83□□□□□ -0.19
USP40-208ENST00000450966 MCPH1Q8NEM0 835 aa13.83□□□□□ -0.19
USP40-208ENST00000450966 ATL2Q8NHH9 583 aa13.83□□□□□ -0.19
USP40-208ENST00000450966 WBP11Q9Y2W2 641 aaKnown RBP13.83□□□□□ -0.19
USP40-208ENST00000450966 ABL2P42684 1182 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 ACAP2Q15057 778 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 FAM83BQ5T0W9 1011 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 PDXDC2PQ6P474 469 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 HHIPL2Q6UWX4 724 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 FAF2Q96CS3 445 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 CITED4Q96RK1 184 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 COQ6Q9Y2Z9 468 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 PPP2R3BQ9Y5P8 575 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 REREQ9P2R6 1566 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 TECPR2O15040 1411 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 ADAMTS13Q76LX8 1427 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 NKX1-1Q15270 411 aaPredicted RBP13.83□□□□□ -0.2
USP40-208ENST00000450966 PARP6Q2NL67 630 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 FAM45BPQ6NSW5 357 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 PACS1Q6VY07 963 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 RYBPQ8N488 228 aaPredicted RBP13.83□□□□□ -0.2
USP40-208ENST00000450966 RIN3Q8TB24 985 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 ECSITQ9BQ95 431 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 SLC13A1Q9BZW2 595 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 C2orf40Q9H1Z8 148 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 ALDH8A1Q9H2A2 487 aaPredicted RBP13.83□□□□□ -0.2
USP40-208ENST00000450966 TDRD3Q9H7E2 651 aaKnown RBP13.83□□□□□ -0.2
USP40-208ENST00000450966 TOPORSQ9NS56 1045 aaPredicted RBP13.83□□□□□ -0.2
USP40-208ENST00000450966 TBCCD1Q9NVR7 557 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 CROTQ9UKG9 612 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 FAM170AA1A519 330 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 ANGPT2O15123 496 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 MTSS1O43312 755 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 FXR1P51114 621 aaKnown RBP eCLIP13.83□□□□□ -0.2
USP40-208ENST00000450966 GRIK3Q13003 919 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 ZNF211Q13398 564 aaPredicted RBP13.83□□□□□ -0.2
USP40-208ENST00000450966 TSTA3Q13630 321 aaPredicted RBP13.83□□□□□ -0.2
USP40-208ENST00000450966 SPANXN2Q5MJ10 180 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 IKBIPQ70UQ0 350 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 P3H2Q8IVL5 708 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.83□□□□□ -0.2
USP40-208ENST00000450966 TUBE1Q9UJT0 475 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 IQSEC2Q5JU85 1478 aa13.83□□□□□ -0.2
USP40-208ENST00000450966 PSMA4P25789 261 aaKnown RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 EGFLAMQ63HQ2 1017 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 TSPAN14Q8NG11 270 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 RBMX2Q9Y388 322 aaKnown RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 FADS3Q9Y5Q0 445 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 SPATA31D1Q6ZQQ2 1576 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 ASMTLO95671 621 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 IFNAR1P17181 557 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 PMLP29590 882 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 TAF1CQ15572 869 aaPredicted RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 ALX1Q15699 326 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 PRR5LQ6MZQ0 368 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 NEK5Q6P3R8 708 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 CCDC81Q6ZN84 652 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 ZBTB49Q6ZSB9 765 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 TTC39CQ8N584 583 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 350.5 ms