RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 PTPRJQ12913 1337 aa11.31□□□□□ -0.6
CCDC9-203ENST00000596938 MYO10Q9HD67 2058 aa11.31□□□□□ -0.6
CCDC9-203ENST00000596938 ZDBF2Q9HCK1 2354 aa11.31□□□□□ -0.6
CCDC9-203ENST00000596938 C2orf16Q68DN1 1984 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 STK25O00506 426 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 PDXKO00764 312 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 NRG2O14511 850 aaPredicted RBP11.3□□□□□ -0.6
CCDC9-203ENST00000596938 EXOC3O60645 756 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 CST3P01034 146 aaPredicted RBP11.3□□□□□ -0.6
CCDC9-203ENST00000596938 RPN1P04843 607 aaKnown RBP11.3□□□□□ -0.6
CCDC9-203ENST00000596938 DLATP10515 647 aaKnown RBP11.3□□□□□ -0.6
CCDC9-203ENST00000596938 TNNI1P19237 187 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 FCARP24071 287 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 CLDN10P78369 228 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 NUCB2P80303 420 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 TSPY1Q01534 308 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 PRKCQQ04759 706 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 BFSP1Q12934 665 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 SOWAHAQ2M3V2 549 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 MGAT5BQ3V5L5 792 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 SLC44A4Q53GD3 710 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 LMBRD2Q68DH5 695 aaPredicted RBP11.3□□□□□ -0.6
CCDC9-203ENST00000596938 SLC9A9Q8IVB4 645 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 TTC9BQ8N6N2 239 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 KIAA0895Q8NCT3 520 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 SHKBP1Q8TBC3 707 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 E2F7Q96AV8 911 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 FAM84AQ96KN4 292 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 PLA2G2FQ9BZM2 168 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 KCTD10Q9H3F6 313 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 TBC1D17Q9HA65 648 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 ABCB6Q9NP58 842 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 ARHGEF3Q9NR81 526 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 DDX43Q9NXZ2 648 aaKnown RBP11.3□□□□□ -0.6
CCDC9-203ENST00000596938 PCDHB5Q9Y5E4 795 aa11.3□□□□□ -0.6
CCDC9-203ENST00000596938 ZNF318Q5VUA4 2279 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 A0A1W2PRU2 124 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 SOAT2O75908 522 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 RHOBTB3O94955 611 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 ZNF202O95125 648 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 KIF20AO95235 890 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 STAU1O95793 577 aaKnown RBP11.29□□□□□ -0.6
CCDC9-203ENST00000596938 GJA1P17302 382 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 ATF6P18850 670 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 PCSK1P29120 753 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 WEE1P30291 646 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 AP3M2P53677 418 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 MYL7Q01449 175 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 DPYDQ12882 1025 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 VEPH1Q14D04 833 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 TEAD2Q15562 447 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 INTS6LQ5JSJ4 861 aaKnown RBP11.29□□□□□ -0.6
CCDC9-203ENST00000596938 FAM171BQ6P995 826 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 KRBA2Q6ZNG9 492 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 GAREM2Q75VX8 874 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 CCDC105Q8IYK2 499 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 ADGRF2Q8IZF7 708 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 FSIP1Q8NA03 581 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 ZSCAN18Q8TBC5 510 aaPredicted RBP11.29□□□□□ -0.6
CCDC9-203ENST00000596938 ZNF516Q92618 1163 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 CCDC47Q96A33 483 aaKnown RBP11.29□□□□□ -0.6
CCDC9-203ENST00000596938 CCDC127Q96BQ5 260 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 PKMYT1Q99640 499 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 CGRRF1Q99675 332 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 SEPT5Q99719 369 aaPredicted RBP11.29□□□□□ -0.6
CCDC9-203ENST00000596938 DDX23Q9BUQ8 820 aaKnown RBP11.29□□□□□ -0.6
CCDC9-203ENST00000596938 TRMT61BQ9BVS5 477 aaKnown RBP11.29□□□□□ -0.6
CCDC9-203ENST00000596938 GZF1Q9H116 711 aaPredicted RBP11.29□□□□□ -0.6
CCDC9-203ENST00000596938 TRPV5Q9NQA5 729 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 TMLHEQ9NVH6 421 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 ABI2Q9NYB9 513 aaPredicted RBP11.29□□□□□ -0.6
CCDC9-203ENST00000596938 SIT1Q9Y3P8 196 aa11.29□□□□□ -0.6
CCDC9-203ENST00000596938 PDCD11Q14690 1871 aaKnown RBP11.28□□□□□ -0.6
CCDC9-203ENST00000596938 TACC1O75410 805 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 PSMC3P17980 439 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 RFX1P22670 979 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 WARSP23381 471 aaKnown RBP11.28□□□□□ -0.6
CCDC9-203ENST00000596938 GABRR2P28476 465 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 ATICP31939 592 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 SNW1Q13573 536 aaKnown RBP11.28□□□□□ -0.6
CCDC9-203ENST00000596938 KCNB1Q14721 858 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 MLF2Q15773 248 aaPredicted RBP11.28□□□□□ -0.6
CCDC9-203ENST00000596938 CFAP221Q4G0U5 840 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 OSTM1Q86WC4 334 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 MFSD6LQ8IWD5 586 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 DTWD2Q8NBA8 298 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 FAM200AQ8TCP9 573 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 PARD3BQ8TEW8 1205 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 DEPDC1BQ8WUY9 529 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 KBTBD7Q8WVZ9 684 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 DNASE1L2Q92874 299 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 IRF7Q92985 503 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 CCDC34Q96HJ3 373 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 FUBP3Q96I24 572 aaKnown RBP eCLIP11.28□□□□□ -0.6
CCDC9-203ENST00000596938 NELL2Q99435 816 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 LPIN3Q9BQK8 851 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 OSBPL6Q9BZF3 934 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 ATXN3LQ9H3M9 355 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 GOLPH3LQ9H4A5 285 aa11.28□□□□□ -0.6
CCDC9-203ENST00000596938 IL21Q9HBE4 155 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 253.4 ms