RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 GNL1P36915 607 aaPredicted RBP18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 PIK3CAP42336 1068 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 GCLMP48507 274 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 EPHB3P54753 998 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 MAPRE1Q15691 268 aaKnown RBP18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 C1orf220Q5T0J3 134 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 KRT39Q6A163 491 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 FRMD5Q7Z6J6 570 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 EEF2KMTQ96G04 330 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 TMEM209Q96SK2 561 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 XYLT2Q9H1B5 865 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 NXF1Q9UBU9 619 aaKnown RBP18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 CDH9Q9ULB4 789 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 CTNND2Q9UQB3 1225 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 PCDHB5Q9Y5E4 795 aa18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 ZFP37Q9Y6Q3 630 aaPredicted RBP18.51■□□□□ 0.55
SHKBP1-212ENST00000596163 C2CD4DB7Z1M9 353 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 ZNF197O14709 1029 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 VNN1O95497 513 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 MBD3O95983 291 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 TRIM49P0CI25 452 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 TRIM49CP0CI26 452 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 TWF1Q12792 350 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 CCDC40Q4G0X9 1142 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 PABPC1LQ4VXU2 614 aaKnown RBP18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 INTS6LQ5JSJ4 861 aaKnown RBP18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 TCERG1LQ5VWI1 586 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 TTI2Q6NXR4 508 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 RNF135Q8IUD6 432 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 ATAD1Q8NBU5 361 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 LEMD2Q8NC56 503 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 OR6B3Q8NGW1 331 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 DACH1Q9UI36 760 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 YIPF1Q9Y548 306 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 ASB3Q9Y575 518 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 SCN1AP35498 2009 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 PLXNA3P51805 1871 aa18.5■□□□□ 0.55
SHKBP1-212ENST00000596163 VCANP13611 3396 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 HLA-DRAP01903 254 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 TRIM21P19474 475 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 SP100P23497 879 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 PPP3CAQ08209 521 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 CYP4A22Q5TCH4 519 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 C4orf50Q6ZRC1 276 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 ITIH5Q86UX2 942 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 LRRTM3Q86VH5 581 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 OSTM1Q86WC4 334 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 KBTBD7Q8WVZ9 684 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 MMRN2Q9H8L6 949 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 AVENQ9NQS1 362 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 DNMT3BQ9UBC3 853 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 RWDD2AQ9UIY3 292 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 SLC27A5Q9Y2P5 690 aa18.49■□□□□ 0.55
SHKBP1-212ENST00000596163 VNN2O95498 520 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 ASS1P00966 412 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 PDGFRBP09619 1106 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 ACAT1P24752 427 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 MXI1P50539 228 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 STX17P56962 302 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 VEPH1Q14D04 833 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 MGAT5BQ3V5L5 792 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 DCAF17Q5H9S7 520 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 PDZD4Q76G19 769 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 GET4Q7L5D6 327 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 SPATA2LQ8IUW3 424 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 FEZF2Q8TBJ5 459 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 FAM200AQ8TCP9 573 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 SEPT5Q99719 369 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 DUSP9Q99956 384 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 SYT15Q9BQS2 421 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 CORO1BQ9BR76 489 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 MRPL45Q9BRJ2 306 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 DNAI2Q9GZS0 605 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 ABCB6Q9NP58 842 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 ABI2Q9NYB9 513 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 MRPS23Q9Y3D9 190 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 MTCL1Q9Y4B5 1905 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 TTC28Q96AY4 2481 aa18.48■□□□□ 0.55
SHKBP1-212ENST00000596163 A8MXQ7 604 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 DCXO43602 365 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 MICAL2O94851 1124 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 FGF19O95750 216 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 RHOP08100 348 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 HAPLN1P10915 354 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 RPL10AP62906 217 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 TAF12Q16514 161 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 WDR44Q5JSH3 913 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 FAM171BQ6P995 826 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 FBXL13Q8NEE6 735 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 GPT2Q8TD30 523 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 TAS1R2Q8TE23 839 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 NXPE3Q969Y0 559 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 FUBP3Q96I24 572 aaKnown RBP eCLIP18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 FAXDC2Q96IV6 333 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 SRRTQ9BXP5 876 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 ASAH2Q9NR71 780 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 HCFC1R1Q9NWW0 138 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 CEP72Q9P209 647 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 EPS15L1Q9UBC2 864 aa18.47■□□□□ 0.55
SHKBP1-212ENST00000596163 MAGEC2Q9UBF1 373 aaPredicted RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms