RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 TOP6BLQ8N6T0 577 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 APPL2Q8NEU8 664 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 CMASQ8NFW8 434 aaPredicted RBP9.89□□□□□ -0.83
VPS35-206ENST00000565228 PPP2R3CQ969Q6 453 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 TCEAL4Q96EI5 215 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 ZNF560Q96MR9 790 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 CEP63Q96MT8 703 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 MYADMQ96S97 322 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 SMOC2Q9H3U7 446 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 SFXN1Q9H9B4 322 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 TMEM8AQ9HCN3 771 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 ZNF334Q9HCZ1 680 aaPredicted RBP9.89□□□□□ -0.83
VPS35-206ENST00000565228 SAMSN1Q9NSI8 373 aaKnown RBP9.89□□□□□ -0.83
VPS35-206ENST00000565228 DDX43Q9NXZ2 648 aaKnown RBP9.89□□□□□ -0.83
VPS35-206ENST00000565228 NXF1Q9UBU9 619 aaKnown RBP9.89□□□□□ -0.83
VPS35-206ENST00000565228 RWDD2AQ9UIY3 292 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 AJAP1Q9UKB5 411 aaPredicted RBP9.89□□□□□ -0.83
VPS35-206ENST00000565228 GTF3C4Q9UKN8 822 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 FRMD4BQ9Y2L6 1034 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 COQ4Q9Y3A0 265 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 ZNF638Q14966 1978 aaKnown RBP9.88□□□□□ -0.83
VPS35-206ENST00000565228 NCANO14594 1321 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 COL4A3Q01955 1670 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 C2CD4DB7Z1M9 353 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 LOC730098B7Z3J9 87 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 H7C4K7 107 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 C1RP00736 705 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 PDGFRBP09619 1106 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 EPB41P11171 864 aaKnown RBP9.88□□□□□ -0.83
VPS35-206ENST00000565228 HOXB8P17481 243 aaPredicted RBP9.88□□□□□ -0.83
VPS35-206ENST00000565228 RPL13P26373 211 aaKnown RBP9.88□□□□□ -0.83
VPS35-206ENST00000565228 PNPLA4P41247 253 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 ENPEPQ07075 957 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 CBX2Q14781 532 aaPredicted RBP9.88□□□□□ -0.83
VPS35-206ENST00000565228 ZNF699Q32M78 642 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 DCAF17Q5H9S7 520 aaPredicted RBP9.88□□□□□ -0.83
VPS35-206ENST00000565228 INTS6LQ5JSJ4 861 aaKnown RBP9.88□□□□□ -0.83
VPS35-206ENST00000565228 CAVIN1Q6NZI2 390 aaKnown RBP9.88□□□□□ -0.83
VPS35-206ENST00000565228 GRASPQ7Z6J2 395 aaPredicted RBP9.88□□□□□ -0.83
VPS35-206ENST00000565228 TMC8Q8IU68 726 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 UBR7Q8N806 425 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 MLKLQ8NB16 471 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 ITFG1Q8TB96 612 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 GPR152Q8TDT2 470 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 CCDC34Q96HJ3 373 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 TSG101Q99816 390 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 BCO2Q9BYV7 579 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 PRKD2Q9BZL6 878 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 CYP4F11Q9HBI6 524 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 DZANK1Q9NVP4 752 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 AFF4Q9UHB7 1163 aaKnown RBP9.88□□□□□ -0.83
VPS35-206ENST00000565228 INSL5Q9Y5Q6 135 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 ANAPC1Q9H1A4 1944 aa9.88□□□□□ -0.83
VPS35-206ENST00000565228 TECTAO75443 2155 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 OR6C75A6NL08 312 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 CLDN5O00501 218 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 TACC1O75410 805 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 CPB1P15086 417 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 GJA1P17302 382 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 CYP2F1P24903 491 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 PIK3CAP42336 1068 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 FMO5P49326 533 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 MXI1P50539 228 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 NOP14P78316 857 aaKnown RBP9.87□□□□□ -0.83
VPS35-206ENST00000565228 TWF1Q12792 350 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 MTMR3Q13615 1198 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 BMS1Q14692 1282 aaKnown RBP9.87□□□□□ -0.83
VPS35-206ENST00000565228 MIIPQ5JXC2 388 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 PRSS36Q5K4E3 855 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 CCDC183Q5T5S1 534 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 KRT39Q6A163 491 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 PDXDC1Q6P996 788 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 APTXQ7Z2E3 356 aaKnown RBP9.87□□□□□ -0.83
VPS35-206ENST00000565228 FRMD5Q7Z6J6 570 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 USP37Q86T82 979 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 TMEM150AQ86TG1 271 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 ARHGEF19Q8IW93 802 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 HDAC7Q8WUI4 952 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 SMG7Q92540 1137 aaKnown RBP9.87□□□□□ -0.83
VPS35-206ENST00000565228 MYLPFQ96A32 169 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 CNOT6LQ96LI5 555 aaKnown RBP9.87□□□□□ -0.83
VPS35-206ENST00000565228 ACBD6Q9BR61 282 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 RPP25Q9BUL9 199 aaKnown RBP9.87□□□□□ -0.83
VPS35-206ENST00000565228 ELOVL4Q9GZR5 314 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 PLEKHA4Q9H4M7 779 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 ZDHHC7Q9NXF8 308 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 YIPF1Q9Y548 306 aa9.87□□□□□ -0.83
VPS35-206ENST00000565228 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.87□□□□□ -0.83
VPS35-206ENST00000565228 CFAP54Q96N23 3096 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 RNF225M0QZC1 329 aaPredicted RBP9.86□□□□□ -0.83
VPS35-206ENST00000565228 HUS1O60921 280 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 PHACTR2O75167 634 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 BEST1O76090 585 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 MBD3O95983 291 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 HAPLN1P10915 354 aaPredicted RBP9.86□□□□□ -0.83
VPS35-206ENST00000565228 KRT13P13646 458 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 HMGA1P17096 107 aaKnown RBP9.86□□□□□ -0.83
VPS35-206ENST00000565228 ACO1P21399 889 aaKnown RBP9.86□□□□□ -0.83
VPS35-206ENST00000565228 HOXA9P31269 272 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 ATICP31939 592 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms