RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SPPL2BQ8TCT7 592 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 MRPS31Q92665 395 aaKnown RBP18.32■□□□□ 0.52
VPS29-204ENST00000548259 FAM212AQ96EL1 285 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 P2RY13Q9BPV8 354 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 LPIN3Q9BQK8 851 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 LLPHQ9BRT6 129 aaKnown RBP18.32■□□□□ 0.52
VPS29-204ENST00000548259 SLC46A2Q9BY10 475 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 SMOC1Q9H4F8 434 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 EBF3Q9H4W6 596 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 TDP1Q9NUW8 608 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 TRIP11Q15643 1979 aa18.31■□□□□ 0.52
VPS29-204ENST00000548259 OGTO15294 1046 aa18.31■□□□□ 0.52
VPS29-204ENST00000548259 CYP11A1P05108 521 aa18.31■□□□□ 0.52
VPS29-204ENST00000548259 GBP1P32455 592 aa18.31■□□□□ 0.52
VPS29-204ENST00000548259 HMGN5P82970 282 aaKnown RBP18.31■□□□□ 0.52
VPS29-204ENST00000548259 RAD51AP2Q09MP3 1159 aa18.31■□□□□ 0.52
VPS29-204ENST00000548259 SYT13Q7L8C5 426 aa18.31■□□□□ 0.52
VPS29-204ENST00000548259 FBXO18Q8NFZ0 1043 aa18.31■□□□□ 0.52
VPS29-204ENST00000548259 CDK5RAP3Q96JB5 506 aa18.31■□□□□ 0.52
VPS29-204ENST00000548259 HHIPQ96QV1 700 aa18.31■□□□□ 0.52
VPS29-204ENST00000548259 SMG9Q9H0W8 520 aaKnown RBP18.31■□□□□ 0.52
VPS29-204ENST00000548259 DUSP15Q9H1R2 295 aaPredicted RBP18.31■□□□□ 0.52
VPS29-204ENST00000548259 SDK1Q7Z5N4 2213 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 BCLAF3A2AJT9 711 aaKnown RBP18.3■□□□□ 0.52
VPS29-204ENST00000548259 C4orf47A7E2U8 309 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 EGFP01133 1207 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 ABCD1P33897 745 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 PRPHP41219 470 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 ZNF252P-AS1Q0IIN9 211 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 USP39Q53GS9 565 aaKnown RBP18.3■□□□□ 0.52
VPS29-204ENST00000548259 DCP1BQ8IZD4 617 aaKnown RBP18.3■□□□□ 0.52
VPS29-204ENST00000548259 MAB21L3Q8N8X9 362 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 GIPC2Q8TF65 315 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 ZCWPW1Q9H0M4 648 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 IL21Q9HBE4 155 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 HPS4Q9NQG7 708 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 EBF1Q9UH73 591 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 ZMIZ1Q9ULJ6 1067 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 DERAQ9Y315 318 aa18.3■□□□□ 0.52
VPS29-204ENST00000548259 CITO14578 2027 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 KHNYNO15037 678 aaKnown RBP18.29■□□□□ 0.52
VPS29-204ENST00000548259 CEACAM1P13688 526 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 ATF6P18850 670 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 HOXC13P31276 330 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 GUCY2FP51841 1108 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 FOXC1Q12948 553 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 NR1H3Q13133 447 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 TMEM132DQ14C87 1099 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 ENOX2Q16206 610 aaKnown RBP18.29■□□□□ 0.52
VPS29-204ENST00000548259 C9orf57Q5W0N0 161 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 TCEAL6Q6IPX3 200 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 SYT2Q8N9I0 419 aaPredicted RBP18.29■□□□□ 0.52
VPS29-204ENST00000548259 KDF1Q8NAX2 398 aaPredicted RBP18.29■□□□□ 0.52
VPS29-204ENST00000548259 OR10T2Q8NGX3 314 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 RPLP0P6Q8NHW5 317 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 TCEAL3Q969E4 200 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 MSTO1Q9BUK6 570 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 TMEM9BQ9NQ34 198 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 ABI2Q9NYB9 513 aaPredicted RBP18.29■□□□□ 0.52
VPS29-204ENST00000548259 UXTQ9UBK9 157 aaPredicted RBP18.29■□□□□ 0.52
VPS29-204ENST00000548259 GREB1Q4ZG55 1949 aa18.29■□□□□ 0.52
VPS29-204ENST00000548259 PP2D1A8MPX8 630 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 C1QTNF9BB2RNN3 333 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 CYB561D2O14569 222 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 C1QTNF9P0C862 333 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 CSH1P0DML2 217 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 CSH2P0DML3 217 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 HAPLN1P10915 354 aaPredicted RBP18.28■□□□□ 0.52
VPS29-204ENST00000548259 TNFSF9P41273 254 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 GALK1P51570 392 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 DGKEP52429 567 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 NLRP12P59046 1061 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 PSMD2Q13200 908 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 DMC1Q14565 340 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 ZNF268Q14587 947 aaPredicted RBP18.28■□□□□ 0.52
VPS29-204ENST00000548259 NBR1Q14596 966 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 SH3PXD2AQ5TCZ1 1133 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 TRIM68Q6AZZ1 485 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 JADE1Q6IE81 842 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 USP13Q92995 863 aaPredicted RBP18.28■□□□□ 0.52
VPS29-204ENST00000548259 ATP2A3Q93084 1043 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 ADAM33Q9BZ11 813 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 RALYQ9UKM9 306 aaKnown RBP18.28■□□□□ 0.52
VPS29-204ENST00000548259 LIMCH1Q9UPQ0 1083 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 PCDHB5Q9Y5E4 795 aa18.28■□□□□ 0.52
VPS29-204ENST00000548259 PDCD11Q14690 1871 aaKnown RBP18.28■□□□□ 0.52
VPS29-204ENST00000548259 ADRB2P07550 413 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 CSRP1P21291 193 aaKnown RBP18.27■□□□□ 0.52
VPS29-204ENST00000548259 CDC25AP30304 524 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 TAF6P49848 677 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 NCKAP1LP55160 1127 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 TSPY1Q01534 308 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 NFE2Q16621 373 aaPredicted RBP18.27■□□□□ 0.52
VPS29-204ENST00000548259 KCNK18Q7Z418 384 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 MON1AQ86VX9 555 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 CCDC83Q8IWF9 413 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 TSTD1Q8NFU3 115 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 CD101Q93033 1021 aa18.27■□□□□ 0.52
VPS29-204ENST00000548259 PYM1Q9BRP8 204 aaKnown RBP18.27■□□□□ 0.52
VPS29-204ENST00000548259 ASB7Q9H672 318 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 494.3 ms