RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	ZNF268	Q14587	947 aa	Predicted RBP	13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	TAF12	Q16514	161 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	ECM1	Q16610	540 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	CC2D1A	Q6P1N0	951 aa	Predicted RBP	13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	CPA6	Q8N4T0	437 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	TTC9B	Q8N6N2	239 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	NSUN7	Q8NE18	718 aa	Known RBP	13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	RPLP0P6	Q8NHW5	317 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	SPPL2B	Q8TCT7	592 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	SPIRE2	Q8WWL2	714 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	KIF12	Q96FN5	646 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	KIF2C	Q99661	725 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	SEPT5	Q99719	369 aa	Predicted RBP	13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	P2RY13	Q9BPV8	354 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	LPIN3	Q9BQK8	851 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	SLC46A2	Q9BY10	475 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	EBF3	Q9H4W6	596 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	TDP1	Q9NUW8	608 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	LRWD1	Q9UFC0	647 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	EVL	Q9UI08	416 aa	Predicted RBP	13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	TBX20	Q9UMR3	447 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	DNM3	Q9UQ16	869 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079		H0YCG3	227 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	SCP2	P22307	547 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	GUCY2C	P25092	1073 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	GBP1	P32455	592 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	DPP6	P42658	865 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	TRAPPC10	P48553	1259 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	SMTN	P53814	917 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	ANAPC15	P60006	121 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	LMAN2	Q12907	356 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	PDIA5	Q14554	519 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	MGAT5B	Q3V5L5	792 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	USP39	Q53GS9	565 aa	Known RBP	13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	LRSAM1	Q6UWE0	723 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	CYP2U1	Q7Z449	544 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	GPIHBP1	Q8IV16	184 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	IGSF22	Q8N9C0	903 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	SNX29	Q8TEQ0	813 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	KCNN1	Q92952	543 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	ZCWPW1	Q9H0M4	648 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	SLC32A1	Q9H598	525 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	POLD4	Q9HCU8	107 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	LHX6	Q9UPM6	363 aa		13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	CNOT1	A5YKK6	2376 aa	Known RBP	13.47	□□□□□ -0.25
CAPN1-223	ENST00000533079	CACNA1G	O43497	2377 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	OTOL1	A6NHN0	477 aa	Predicted RBP	13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	CDX4	O14627	284 aa	Predicted RBP	13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	SLC16A4	O15374	487 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	SOAT2	O75908	522 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	MAPT	P10636	758 aa	Known RBP	13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	SPINK2	P20155	84 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	DGKE	P52429	567 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	LILRA4	P59901	499 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	RING1	Q06587	406 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	SLC39A12	Q504Y0	691 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	TRIM68	Q6AZZ1	485 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	CD302	Q8IX05	232 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	KCTD17	Q8N5Z5	321 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	TMEM161B	Q8NDZ6	487 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	TSTD1	Q8NFU3	115 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	OR10T2	Q8NGX3	314 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	USP13	Q92995	863 aa	Predicted RBP	13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	CD101	Q93033	1021 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	ATP2A3	Q93084	1043 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	ZBTB45	Q96K62	511 aa	Predicted RBP	13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	SMG9	Q9H0W8	520 aa	Known RBP	13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	FOXP1	Q9H334	677 aa	Predicted RBP	13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	MSRB2	Q9Y3D2	182 aa		13.46	□□□□□ -0.25
CAPN1-223	ENST00000533079	OBSL1	O75147	1896 aa		13.46	□□□□□ -0.26
CAPN1-223	ENST00000533079	FREM2	Q5SZK8	3169 aa		13.46	□□□□□ -0.26
CAPN1-223	ENST00000533079		H0Y626	953 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	DCLK1	O15075	740 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	TRIM16	O95361	564 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	ADRB2	P07550	413 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	PLS3	P13797	630 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	GJA4	P35212	333 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	MATR3	P43243	847 aa	Known RBP eCLIP	13.45	□□□□□ -0.26	4e-6	■□□□□ 9.5
CAPN1-223	ENST00000533079	GALK1	P51570	392 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	NLRP12	P59046	1061 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	MTF1	Q14872	753 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	SEZ6	Q53EL9	994 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	TTC38	Q5R3I4	469 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	SPATA1	Q5VX52	437 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	RINT1	Q6NUQ1	792 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	C1orf186	Q6ZWK4	172 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	RASSF3	Q86WH2	238 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	MAB21L3	Q8N8X9	362 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	MRPS31	Q92665	395 aa	Known RBP	13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	SENP8	Q96LD8	212 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	CNOT6L	Q96LI5	555 aa	Known RBP	13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	RUSC1	Q9BVN2	902 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	KCND2	Q9NZV8	630 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	UXT	Q9UBK9	157 aa	Predicted RBP	13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	CCL26	Q9Y258	94 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	NBEA	Q8NFP9	2946 aa		13.45	□□□□□ -0.26
CAPN1-223	ENST00000533079	MYO16	Q9Y6X6	1858 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	UPK3BL1	B0FP48	263 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079	UPK3BL2	E5RIL1	263 aa		13.44	□□□□□ -0.26
CAPN1-223	ENST00000533079		E9PMD0	336 aa		13.44	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms