RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PAPD7Q5XG87 772 aaKnown RBP5.02□□□□□ -1.61
VPS29-202ENST00000447578 NPNTQ6UXI9 565 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 KIAA0319LQ8IZA0 1049 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 GPR156Q8NFN8 814 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 MYRIPQ8NFW9 859 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 OR7D4Q8NG98 312 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 TSPEARQ8WU66 669 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 SLC9A6Q92581 669 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 NELL1Q92832 810 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 FATE1Q969F0 183 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 NACC2Q96BF6 587 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 TBCBQ99426 244 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 APOL5Q9BWW9 433 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 BHMT2Q9H2M3 363 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 LDAHQ9H6V9 325 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 CASS4Q9NQ75 786 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 FOXJ2Q9P0K8 574 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 L1RE1Q9UN81 338 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 SIK3Q9Y2K2 1263 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 FMN1Q68DA7 1419 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 SETD5Q9C0A6 1442 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 WDR97A6NE52 1622 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 ABCA5Q8WWZ7 1642 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 F5H423 210 aaPredicted RBP5.01□□□□□ -1.61
VPS29-202ENST00000447578 GOLIM4O00461 696 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 HTRA2O43464 458 aaPredicted RBP5.01□□□□□ -1.61
VPS29-202ENST00000447578 FGAP02671 866 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 RAP2AP10114 183 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 GSPT1P15170 499 aaKnown RBP5.01□□□□□ -1.61
VPS29-202ENST00000447578 HTR1BP28222 390 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 SREBF1P36956 1147 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 CACNB3P54284 484 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 HSD11B2P80365 405 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 IFIT5Q13325 482 aaKnown RBP5.01□□□□□ -1.61
VPS29-202ENST00000447578 UBXN2BQ14CS0 331 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 ANO6Q4KMQ2 910 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 ANKRD42Q8N9B4 389 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 PNISRQ8TF01 805 aaKnown RBP5.01□□□□□ -1.61
VPS29-202ENST00000447578 NRG4Q8WWG1 115 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 UHRF1Q96T88 793 aaPredicted RBP5.01□□□□□ -1.61
VPS29-202ENST00000447578 CGRRF1Q99675 332 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 NAP1L4Q99733 375 aaKnown RBP5.01□□□□□ -1.61
VPS29-202ENST00000447578 HERPUD2Q9BSE4 406 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 B3GNT5Q9BYG0 378 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 NUP62CLQ9H1M0 184 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 BCO1Q9HAY6 547 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 GNL3LQ9NVN8 582 aaKnown RBP5.01□□□□□ -1.61
VPS29-202ENST00000447578 CFAP43Q8NDM7 1665 aa5.01□□□□□ -1.61
VPS29-202ENST00000447578 ABHD14A-ACY1A0A1B0GW23 586 aa5□□□□□ -1.61
VPS29-202ENST00000447578 CAPN8A6NHC0 703 aa5□□□□□ -1.61
VPS29-202ENST00000447578 TBX3O15119 743 aa5□□□□□ -1.61
VPS29-202ENST00000447578 RBMXL2O75526 392 aaKnown RBP5□□□□□ -1.61
VPS29-202ENST00000447578 EDNRBP24530 442 aa5□□□□□ -1.61
VPS29-202ENST00000447578 HALP42357 657 aa5□□□□□ -1.61
VPS29-202ENST00000447578 MALLQ13021 153 aa5□□□□□ -1.61
VPS29-202ENST00000447578 SP140Q13342 867 aa5□□□□□ -1.61
VPS29-202ENST00000447578 CCDC157Q569K6 752 aa5□□□□□ -1.61
VPS29-202ENST00000447578 MUM1L1Q5H9M0 696 aa5□□□□□ -1.61
VPS29-202ENST00000447578 XRRA1Q6P2D8 792 aa5□□□□□ -1.61
VPS29-202ENST00000447578 DAAM2Q86T65 1068 aa5□□□□□ -1.61
VPS29-202ENST00000447578 MYLK4Q86YV6 388 aaPredicted RBP5□□□□□ -1.61
VPS29-202ENST00000447578 SMAP1Q8IYB5 467 aaPredicted RBP5□□□□□ -1.61
VPS29-202ENST00000447578 PQLC1Q8N2U9 271 aa5□□□□□ -1.61
VPS29-202ENST00000447578 DPF2Q92785 391 aa5□□□□□ -1.61
VPS29-202ENST00000447578 FUBP1Q96AE4 644 aaKnown RBP5□□□□□ -1.61
VPS29-202ENST00000447578 PAWRQ96IZ0 340 aaKnown RBP5□□□□□ -1.61
VPS29-202ENST00000447578 MYOCQ99972 504 aa5□□□□□ -1.61
VPS29-202ENST00000447578 ADI1Q9BV57 179 aa5□□□□□ -1.61
VPS29-202ENST00000447578 LDHAL6BQ9BYZ2 381 aaPredicted RBP5□□□□□ -1.61
VPS29-202ENST00000447578 REXO4Q9GZR2 422 aaKnown RBP5□□□□□ -1.61
VPS29-202ENST00000447578 MAF1Q9H063 256 aa5□□□□□ -1.61
VPS29-202ENST00000447578 RNPEPQ9H4A4 650 aa5□□□□□ -1.61
VPS29-202ENST00000447578 GALNT9Q9HCQ5 603 aa5□□□□□ -1.61
VPS29-202ENST00000447578 DMRT3Q9NQL9 472 aa5□□□□□ -1.61
VPS29-202ENST00000447578 KMT5AQ9NQR1 393 aa5□□□□□ -1.61
VPS29-202ENST00000447578 SEMA4GQ9NTN9 838 aa5□□□□□ -1.61
VPS29-202ENST00000447578 TBCCD1Q9NVR7 557 aa5□□□□□ -1.61
VPS29-202ENST00000447578 FBXO34Q9NWN3 711 aa5□□□□□ -1.61
VPS29-202ENST00000447578 FNIP2Q9P278 1114 aa5□□□□□ -1.61
VPS29-202ENST00000447578 POLHQ9Y253 713 aa5□□□□□ -1.61
VPS29-202ENST00000447578 IPPQ9Y573 584 aa5□□□□□ -1.61
VPS29-202ENST00000447578 MTUS2Q5JR59 1369 aa5□□□□□ -1.61
VPS29-202ENST00000447578 SNAPC4Q5SXM2 1469 aa5□□□□□ -1.61
VPS29-202ENST00000447578 MRC2Q9UBG0 1479 aa5□□□□□ -1.61
VPS29-202ENST00000447578 CTTNBP2Q8WZ74 1663 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 CFAP69A5D8W1 941 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 MYADML2A6NDP7 307 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 MGEA5O60502 916 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 GPANK1O95872 356 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 ONECUT2O95948 504 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 POMCP01189 267 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 ATP5JP18859 108 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 FPR1P21462 350 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 GCSHP23434 173 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 PEX2P28328 305 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 ECHS1P30084 290 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 ALDH1A3P47895 512 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 PER3P56645 1201 aa4.99□□□□□ -1.61
VPS29-202ENST00000447578 MRPS35P82673 323 aaKnown RBP4.99□□□□□ -1.61
VPS29-202ENST00000447578 CNN3Q15417 329 aaKnown RBP4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms