RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 KIF20AO95235 890 aa21.64■■□□□ 1.05
SS18-218ENST00000581021 CD44P16070 742 aaKnown RBP21.64■■□□□ 1.05
SS18-218ENST00000581021 SOWAHAQ2M3V2 549 aa21.64■■□□□ 1.05
SS18-218ENST00000581021 COBLL1Q53SF7 1204 aa21.64■■□□□ 1.05
SS18-218ENST00000581021 TDRD10Q5VZ19 366 aaKnown RBP21.64■■□□□ 1.05
SS18-218ENST00000581021 ATAD1Q8NBU5 361 aa21.64■■□□□ 1.05
SS18-218ENST00000581021 ELMO3Q96BJ8 720 aa21.64■■□□□ 1.05
SS18-218ENST00000581021 OXCT2Q9BYC2 517 aaPredicted RBP21.64■■□□□ 1.05
SS18-218ENST00000581021 XYLT2Q9H1B5 865 aa21.64■■□□□ 1.05
SS18-218ENST00000581021 DNMT3BQ9UBC3 853 aaKnown RBP21.64■■□□□ 1.05
SS18-218ENST00000581021 POLIQ9UNA4 740 aa21.64■■□□□ 1.05
SS18-218ENST00000581021 ASGR2P07307 311 aa21.63■■□□□ 1.05
SS18-218ENST00000581021 CLEC17AQ6ZS10 378 aa21.63■■□□□ 1.05
SS18-218ENST00000581021 ADSSL1Q8N142 457 aa21.63■■□□□ 1.05
SS18-218ENST00000581021 KBTBD7Q8WVZ9 684 aa21.63■■□□□ 1.05
SS18-218ENST00000581021 SMOC2Q9H3U7 446 aa21.63■■□□□ 1.05
SS18-218ENST00000581021 TMLHEQ9NVH6 421 aa21.63■■□□□ 1.05
SS18-218ENST00000581021 YIPF1Q9Y548 306 aa21.63■■□□□ 1.05
SS18-218ENST00000581021 NME7Q9Y5B8 376 aa21.63■■□□□ 1.05
SS18-218ENST00000581021 TRIM49BA6NDI0 452 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 DCXO43602 365 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 SOAT2O75908 522 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 VNN1O95497 513 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 C4BPAP04003 597 aaKnown RBP21.62■■□□□ 1.05
SS18-218ENST00000581021 MYL6P60660 151 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 DUSP4Q13115 394 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 SLC5A9Q2M3M2 681 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 SLC39A12Q504Y0 691 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 CENPPQ6IPU0 288 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 POTEHQ6S545 545 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 RTL10Q7L3V2 364 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 GET4Q7L5D6 327 aaPredicted RBP21.62■■□□□ 1.05
SS18-218ENST00000581021 METTL23Q86XA0 190 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 ZDHHC14Q8IZN3 488 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 TOP6BLQ8N6T0 577 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 ITFG1Q8TB96 612 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 PKMYT1Q99640 499 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 CEP72Q9P209 647 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 HOOK1Q9UJC3 728 aaKnown RBP21.62■■□□□ 1.05
SS18-218ENST00000581021 SLC27A5Q9Y2P5 690 aa21.62■■□□□ 1.05
SS18-218ENST00000581021 GABRDO14764 452 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 HUS1O60921 280 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 XYLBO75191 536 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 TRIM49P0CI25 452 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 TRIM49CP0CI26 452 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 ACAT1P24752 427 aaKnown RBP21.61■■□□□ 1.05
SS18-218ENST00000581021 ELF1P32519 619 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 TWF1Q12792 350 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 MYO1EQ12965 1108 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 MORC3Q14149 939 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 EDRF1Q3B7T1 1238 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 OTOP3Q7RTS5 596 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 ZC3H3Q8IXZ2 948 aaKnown RBP21.61■■□□□ 1.05
SS18-218ENST00000581021 ADGRF2Q8IZF7 708 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 TMC2Q8TDI7 906 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 IPO9Q96P70 1041 aaKnown RBP21.61■■□□□ 1.05
SS18-218ENST00000581021 DNAJC25Q9H1X3 360 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 LIMD1Q9UGP4 676 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 MAFFQ9ULX9 164 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 FRMD4BQ9Y2L6 1034 aa21.61■■□□□ 1.05
SS18-218ENST00000581021 FAM86C2PA6NEL3 165 aa21.6■■□□□ 1.05
SS18-218ENST00000581021 BIN1O00499 593 aa21.6■■□□□ 1.05
SS18-218ENST00000581021 MAPK13O15264 365 aa21.6■■□□□ 1.05
SS18-218ENST00000581021 LRG1P02750 347 aa21.6■■□□□ 1.05
SS18-218ENST00000581021 FSHRP23945 695 aa21.6■■□□□ 1.05
SS18-218ENST00000581021 ADAM9Q13443 819 aa21.6■■□□□ 1.05
SS18-218ENST00000581021 ANKRD40Q6AI12 368 aa21.6■■□□□ 1.05
SS18-218ENST00000581021 FAM186BQ8IYM0 893 aa21.6■■□□□ 1.05
SS18-218ENST00000581021 ST13P5Q8NFI4 369 aaPredicted RBP21.6■■□□□ 1.05
SS18-218ENST00000581021 MRPL45Q9BRJ2 306 aaKnown RBP21.6■■□□□ 1.05
SS18-218ENST00000581021 DDX43Q9NXZ2 648 aaKnown RBP21.6■■□□□ 1.05
SS18-218ENST00000581021 RHOP08100 348 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 LMO2P25791 158 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 GBP2P32456 591 aaPredicted RBP21.59■■□□□ 1.05
SS18-218ENST00000581021 CCR2P41597 374 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 VAMP7P51809 220 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 PPP3CAQ08209 521 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 BIRC3Q13489 604 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 CAMK4Q16566 473 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 PTPN21Q16825 1174 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 ZACNQ401N2 412 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 PABPC1LQ4VXU2 614 aaKnown RBP21.59■■□□□ 1.05
SS18-218ENST00000581021 HS6ST3Q8IZP7 471 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 THEM5Q8N1Q8 247 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 TMEM86AQ8N2M4 240 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 EPS15L1Q9UBC2 864 aa21.59■■□□□ 1.05
SS18-218ENST00000581021 TECTAO75443 2155 aa21.58■■□□□ 1.05
SS18-218ENST00000581021 PPP1R3GB7ZBB8 358 aa21.58■■□□□ 1.05
SS18-218ENST00000581021 STAU1O95793 577 aaKnown RBP21.58■■□□□ 1.05
SS18-218ENST00000581021 PSMC2P35998 433 aaKnown RBP21.58■■□□□ 1.05
SS18-218ENST00000581021 MCCD1P59942 119 aaPredicted RBP21.58■■□□□ 1.05
SS18-218ENST00000581021 NCOA4Q13772 614 aa21.58■■□□□ 1.05
SS18-218ENST00000581021 INTS6LQ5JSJ4 861 aaKnown RBP21.58■■□□□ 1.05
SS18-218ENST00000581021 PRSS36Q5K4E3 855 aa21.58■■□□□ 1.05
SS18-218ENST00000581021 SV2AQ7L0J3 742 aa21.58■■□□□ 1.05
SS18-218ENST00000581021 ING5Q8WYH8 240 aa21.58■■□□□ 1.05
SS18-218ENST00000581021 ACSF2Q96CM8 615 aaPredicted RBP21.58■■□□□ 1.05
SS18-218ENST00000581021 TCEAL4Q96EI5 215 aa21.58■■□□□ 1.05
SS18-218ENST00000581021 CORO1BQ9BR76 489 aa21.58■■□□□ 1.05
SS18-218ENST00000581021 ATP2C2O75185 946 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 209.1 ms