RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 TBC1D7Q9P0N9 293 aa20.63■□□□□ 0.89
CCDC28A-203ENST00000617445 ZFHX2Q9C0A1 2572 aaPredicted RBP20.63■□□□□ 0.89
CCDC28A-203ENST00000617445 PROB1E7EW31 1015 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 PPEF2O14830 753 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 PNPLA4P41247 253 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 EPHB3P54753 998 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 PRKCQQ04759 706 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 KCNA1Q09470 495 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 SMARCB1Q12824 385 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 TMEM130Q8N3G9 435 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 KCNG4Q8TDN1 519 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 ELSPBP1Q96BH3 223 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 PHOX2BQ99453 314 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 FAM213AQ9BRX8 229 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 GPR88Q9GZN0 384 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 CEP72Q9P209 647 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 SIT1Q9Y3P8 196 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 ASB3Q9Y575 518 aa20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 RIF1Q5UIP0 2472 aaKnown RBP20.62■□□□□ 0.89
CCDC28A-203ENST00000617445 SPTLC1O15269 473 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 ZSCAN22P10073 491 aaPredicted RBP20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 CEBPBP17676 345 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 ALDH1A3P47895 512 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 E2F4Q16254 413 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 SV2CQ496J9 727 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 CENPPQ6IPU0 288 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 CNNM4Q6P4Q7 775 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 BRSK2Q8IWQ3 736 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 THEM5Q8N1Q8 247 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 ZNF560Q96MR9 790 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 KXD1Q9BQD3 176 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 MAGEF1Q9HAY2 307 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 ZFP14Q9HCL3 533 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 YIPF1Q9Y548 306 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 PTPRZ1P23471 2315 aaPredicted RBP20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 TCHHQ07283 1943 aa20.61■□□□□ 0.89
CCDC28A-203ENST00000617445 CYB561D2O14569 222 aa20.6■□□□□ 0.89
CCDC28A-203ENST00000617445 EXTL3O43909 919 aa20.6■□□□□ 0.89
CCDC28A-203ENST00000617445 NBL1P41271 181 aa20.6■□□□□ 0.89
CCDC28A-203ENST00000617445 CASP5P51878 434 aa20.6■□□□□ 0.89
CCDC28A-203ENST00000617445 DUSP4Q13115 394 aa20.6■□□□□ 0.89
CCDC28A-203ENST00000617445 SLC44A4Q53GD3 710 aa20.6■□□□□ 0.89
CCDC28A-203ENST00000617445 EFCAB13Q8IY85 973 aa20.6■□□□□ 0.89
CCDC28A-203ENST00000617445 ST13P5Q8NFI4 369 aaPredicted RBP20.6■□□□□ 0.89
CCDC28A-203ENST00000617445 OSBPL6Q9BZF3 934 aa20.6■□□□□ 0.89
CCDC28A-203ENST00000617445 IKZF4Q9H2S9 585 aa20.6■□□□□ 0.89
CCDC28A-203ENST00000617445 KPNA7A9QM74 516 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 VNN2O95498 520 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 FGF19O95750 216 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 F13A1P00488 732 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 OR4Q2P0C623 313 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 TUFMP49411 452 aaKnown RBP20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 MLF2Q15773 248 aaPredicted RBP20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 C2orf15Q8WU43 125 aaKnown RBP20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 E2F7Q96AV8 911 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 TCEAL4Q96EI5 215 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 ASB16Q96NS5 453 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 PGLYRP2Q96PD5 576 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 PYM1Q9BRP8 204 aaKnown RBP20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 DDX23Q9BUQ8 820 aaKnown RBP20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 TRIM9Q9C026 710 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 FAM86C1Q9NVL1 165 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 RBAKQ9NYW8 714 aaPredicted RBP20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 CFAP45Q9UL16 551 aa20.59■□□□□ 0.89
CCDC28A-203ENST00000617445 F5P12259 2224 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 KANSL1LA0AUZ9 987 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 MTMR11A4FU01 709 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 EIF3DO15371 548 aaKnown RBP eCLIP20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 PRPF6O94906 941 aaKnown RBP20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 MYL4P12829 197 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 CCR2P41597 374 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 TFAMQ00059 246 aaKnown RBP20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 SNW1Q13573 536 aaKnown RBP20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 FAM78AQ5JUQ0 283 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 TANGO2Q6ICL3 276 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 SHC4Q6S5L8 630 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 ITIH5Q86UX2 942 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 HS6ST3Q8IZP7 471 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 PJA1Q8NG27 643 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 DNASE1L2Q92874 299 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 SMARCD2Q92925 531 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 DHX58Q96C10 678 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 SAAL1Q96ER3 474 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 BORCS6Q96GS4 357 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 NELL2Q99435 816 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 ZCWPW1Q9H0M4 648 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 TRPV4Q9HBA0 871 aa20.58■□□□□ 0.89
CCDC28A-203ENST00000617445 FAM186AA6NE01 2351 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 ANGPT1Q15389 498 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 SURF1Q15526 300 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 GPD1LQ8N335 351 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 LRRC52Q8N7C0 313 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 ATAD1Q8NBU5 361 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 PSMG2Q969U7 264 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 C7orf25Q9BPX7 421 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 CBWD1Q9BRT8 395 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 KIAA1586Q9HCI6 787 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 FAM13BQ9NYF5 915 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 ITGA11Q9UKX5 1188 aa20.57■□□□□ 0.88
CCDC28A-203ENST00000617445 TSC2P49815 1807 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms