RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 KPNA7A9QM74 516 aa21.69■■□□□ 1.06
SS18-218ENST00000581021 CCL16O15467 120 aa21.69■■□□□ 1.06
SS18-218ENST00000581021 SV2CQ496J9 727 aa21.69■■□□□ 1.06
SS18-218ENST00000581021 ELMSAN1Q6PJG2 1045 aa21.69■■□□□ 1.06
SS18-218ENST00000581021 RNF19BQ6ZMZ0 732 aa21.69■■□□□ 1.06
SS18-218ENST00000581021 LRRC52Q8N7C0 313 aa21.69■■□□□ 1.06
SS18-218ENST00000581021 ZNF560Q96MR9 790 aa21.69■■□□□ 1.06
SS18-218ENST00000581021 CRISPLD1Q9H336 500 aa21.69■■□□□ 1.06
SS18-218ENST00000581021 WDR6Q9NNW5 1121 aaKnown RBP21.69■■□□□ 1.06
SS18-218ENST00000581021 MUTYHQ9UIF7 546 aa21.69■■□□□ 1.06
SS18-218ENST00000581021 KRT19P08727 400 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 ATF2P15336 505 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 PAX3P23760 479 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 NTHL1P78549 312 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 BFSP1Q12934 665 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 SURF1Q15526 300 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 DUOXA2Q1HG44 320 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 PPM1LQ5SGD2 360 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 TRAPPC11Q7Z392 1133 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 USP37Q86T82 979 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 ANKRD36BP1Q96IX9 119 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 L1RE1Q9UN81 338 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 CLUHO75153 1309 aa21.68■■□□□ 1.06
SS18-218ENST00000581021 ARHGEF37A1IGU5 675 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 LRRIQ3A6PVS8 624 aaPredicted RBP21.67■■□□□ 1.06
SS18-218ENST00000581021 KINO60870 393 aaKnown RBP21.67■■□□□ 1.06
SS18-218ENST00000581021 TNNC2P02585 160 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 HNRNPA1P09651 372 aaKnown RBP eCLIP21.67■■□□□ 1.06
SS18-218ENST00000581021 CPB1P15086 417 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 HOXA9P31269 272 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 PNPLA4P41247 253 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 PRCPP42785 496 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 CDR1P51861 262 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 DLG4P78352 724 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 RBP5P82980 135 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 C1orf220Q5T0J3 134 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 CCDC149Q6ZUS6 474 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 ELOA2Q8IYF1 753 aaPredicted RBP21.67■■□□□ 1.06
SS18-218ENST00000581021 TCEAL8Q8IYN2 117 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 PDCL2Q8N4E4 241 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 SMARCE1Q969G3 411 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 CCDC34Q96HJ3 373 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 PGLYRP2Q96PD5 576 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 GSDMAQ96QA5 445 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 HCFC1R1Q9NWW0 138 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 MAN1B1Q9UKM7 699 aa21.67■■□□□ 1.06
SS18-218ENST00000581021 OR6C75A6NL08 312 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 HCRTO43612 131 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 AKAP3O75969 853 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 CST3P01034 146 aaPredicted RBP21.66■■□□□ 1.06
SS18-218ENST00000581021 TNNI1P19237 187 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 BMP6P22004 513 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 PMS1P54277 932 aaKnown RBP21.66■■□□□ 1.06
SS18-218ENST00000581021 UBE2HP62256 183 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 CLDN10P78369 228 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 ADCY1Q08828 1119 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 NFIL3Q16649 462 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 ZNF658Q5TYW1 1059 aaPredicted RBP21.66■■□□□ 1.06
SS18-218ENST00000581021 TPGS2Q68CL5 300 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 CYP26C1Q6V0L0 522 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 GRASPQ7Z6J2 395 aaPredicted RBP21.66■■□□□ 1.06
SS18-218ENST00000581021 OSTM1Q86WC4 334 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 TTC9BQ8N6N2 239 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 PARD3BQ8TEW8 1205 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 FNBP1Q96RU3 617 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 CYP4F11Q9HBI6 524 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 RMND1Q9NWS8 449 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 GDAP2Q9NXN4 497 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 AFF4Q9UHB7 1163 aaKnown RBP21.66■■□□□ 1.06
SS18-218ENST00000581021 INSL5Q9Y5Q6 135 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 NOTCH4Q99466 2003 aa21.66■■□□□ 1.06
SS18-218ENST00000581021 PI4K2BG5E9Z4 385 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 CALUO43852 315 aaPredicted RBP21.65■■□□□ 1.06
SS18-218ENST00000581021 PRPF40AO75400 957 aaKnown RBP21.65■■□□□ 1.06
SS18-218ENST00000581021 SMC2O95347 1197 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 POU2F2P09086 479 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 NR2F2P24468 414 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 GPR17Q13304 367 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 MYBPC2Q14324 1141 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 CCDC142Q17RM4 750 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 UVSSAQ2YD98 709 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 CEP135Q66GS9 1140 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 ISM2Q6H9L7 571 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 LIMS2Q7Z4I7 341 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 LRRTM3Q86VH5 581 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 TDRD5Q8NAT2 981 aaKnown RBP21.65■■□□□ 1.06
SS18-218ENST00000581021 EEF2KMTQ96G04 330 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 HPDLQ96IR7 371 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 MYADMQ96S97 322 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 ZCWPW1Q9H0M4 648 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 PIDD1Q9HB75 910 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 C11orf16Q9NQ32 467 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 DSEQ9UL01 958 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 USTQ9Y2C2 406 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 NR2E1Q9Y466 385 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 SNX9Q9Y5X1 595 aa21.65■■□□□ 1.06
SS18-218ENST00000581021 DOCK8Q8NF50 2099 aa21.64■■□□□ 1.05
SS18-218ENST00000581021 MTMR11A4FU01 709 aa21.64■■□□□ 1.05
SS18-218ENST00000581021 NRG2O14511 850 aaPredicted RBP21.64■■□□□ 1.05
SS18-218ENST00000581021 PRRG1O14668 218 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 1689 ms