RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 MYL4P12829 197 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 PSMC3P17980 439 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 POU5F1Q01860 360 aaKnown RBP18.57■□□□□ 0.56
CLN3-216ENST00000565316 DUSP4Q13115 394 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 GRM2Q14416 872 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 C9orf57Q5W0N0 161 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 CENPPQ6IPU0 288 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 VITQ6UXI7 678 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 TMC8Q8IU68 726 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 NELL1Q92832 810 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 IRF7Q92985 503 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 SENP8Q96LD8 212 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 GPR88Q9GZN0 384 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 BRD9Q9H8M2 597 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 MAN2B1O00754 1011 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 NFICP08651 508 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 GJA1P17302 382 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 TMEM132DQ14C87 1099 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 PTPAQ15257 358 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 TEAD2Q15562 447 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 ZC2HC1CQ53FD0 456 aaPredicted RBP18.56■□□□□ 0.56
CLN3-216ENST00000565316 SUMF1Q8NBK3 374 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 RASSF8Q8NHQ8 419 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 ZSCAN18Q8TBC5 510 aaPredicted RBP18.56■□□□□ 0.56
CLN3-216ENST00000565316 DEPDC1BQ8WUY9 529 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 EPSTI1Q96J88 318 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 PGLYRP2Q96PD5 576 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 ASB7Q9H672 318 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 ZNF334Q9HCZ1 680 aaPredicted RBP18.56■□□□□ 0.56
CLN3-216ENST00000565316 HSFX1Q9UBD0 423 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 C2CD2Q9Y426 696 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 ASB3Q9Y575 518 aa18.56■□□□□ 0.56
CLN3-216ENST00000565316 MTMR11A4FU01 709 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 CYP11A1P05108 521 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 ODC1P11926 461 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 VIPR2P41587 438 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 ACOT2P49753 483 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 EPHB3P54753 998 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 CSTF1Q05048 431 aaKnown RBP18.55■□□□□ 0.56
CLN3-216ENST00000565316 SLFN12LQ6IEE8 588 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 MAMSTRQ6ZN01 415 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 USP49Q70CQ1 688 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 ZNF720Q7Z2F6 126 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 MFSD6LQ8IWD5 586 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 ATAD1Q8NBU5 361 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 E2F7Q96AV8 911 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 FAM212AQ96EL1 285 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 STRA6Q9BX79 667 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 ZHX3Q9H4I2 956 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 PCDHGA2Q9Y5H1 932 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 PATJQ8NI35 1801 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 CEP250Q9BV73 2442 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 NCANO14594 1321 aa18.55■□□□□ 0.56
CLN3-216ENST00000565316 TISP43B9A030 160 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 ARNTLO00327 626 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 PPP1R37O75864 691 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 PDCP20941 246 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 GDI1P31150 447 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 ALDH1A3P47895 512 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 ID4P47928 161 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 MLLT6P55198 1093 aaPredicted RBP18.54■□□□□ 0.56
CLN3-216ENST00000565316 ADALQ6DHV7 355 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 ARMCX5Q6P1M9 558 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 KRI1Q8N9T8 703 aaKnown RBP18.54■□□□□ 0.56
CLN3-216ENST00000565316 ZBTB44Q8NCP5 570 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 OR10T2Q8NGX3 314 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 HVCN1Q96D96 273 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 TMEM209Q96SK2 561 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 PRMT8Q9NR22 394 aaPredicted RBP18.54■□□□□ 0.56
CLN3-216ENST00000565316 STK17AQ9UEE5 414 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 FBXO2Q9UK22 296 aaPredicted RBP18.54■□□□□ 0.56
CLN3-216ENST00000565316 AGO2Q9UKV8 859 aaKnown RBP18.54■□□□□ 0.56
CLN3-216ENST00000565316 SLC27A5Q9Y2P5 690 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 SRPRBQ9Y5M8 271 aaKnown RBP18.54■□□□□ 0.56
CLN3-216ENST00000565316 CLIC4Q9Y696 253 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 COL4A2P08572 1712 aa18.54■□□□□ 0.56
CLN3-216ENST00000565316 HEPACAM2A8MVW5 462 aa18.53■□□□□ 0.56
CLN3-216ENST00000565316 KINO60870 393 aaKnown RBP18.53■□□□□ 0.56
CLN3-216ENST00000565316 ADSSP30520 456 aa18.53■□□□□ 0.56
CLN3-216ENST00000565316 CRELD2Q6UXH1 353 aaPredicted RBP18.53■□□□□ 0.56
CLN3-216ENST00000565316 ERMP1Q7Z2K6 904 aa18.53■□□□□ 0.56
CLN3-216ENST00000565316 DNAJB7Q7Z6W7 309 aaPredicted RBP18.53■□□□□ 0.56
CLN3-216ENST00000565316 RUBCNQ92622 972 aa18.53■□□□□ 0.56
CLN3-216ENST00000565316 PSMG2Q969U7 264 aa18.53■□□□□ 0.56
CLN3-216ENST00000565316 RSPRY1Q96DX4 576 aa18.53■□□□□ 0.56
CLN3-216ENST00000565316 ZSCAN32Q9NX65 697 aa18.53■□□□□ 0.56
CLN3-216ENST00000565316 DSEQ9UL01 958 aa18.53■□□□□ 0.56
CLN3-216ENST00000565316 A0A1W2PRU2 124 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 VPS37CA5D8V6 355 aaPredicted RBP18.52■□□□□ 0.56
CLN3-216ENST00000565316 ZNF263O14978 683 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 LILRB5O75023 590 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 FGF19O95750 216 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 FCHO2Q0JRZ9 810 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 MTAPQ13126 283 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 GAREM2Q75VX8 874 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 SFR1Q86XK3 245 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 TTC9BQ8N6N2 239 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 DNAJC19Q96DA6 116 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 IER2Q9BTL4 223 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 MKNK1Q9BUB5 465 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms