RNA–Protein interactions for RNA: ENST00000474539.5

CCNL1-215, Transcript of cyclin L1, human

TSL 1 (best)

Gene CCNL1, Length 4,799 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-215	ENST00000474539	TFB1M	Q8WVM0	346 aa	Known RBP	4.87	□□□□□ -1.63
CCNL1-215	ENST00000474539	ULK4	Q96C45	1275 aa		4.87	□□□□□ -1.63
CCNL1-215	ENST00000474539	IL17RA	Q96F46	866 aa		4.87	□□□□□ -1.63
CCNL1-215	ENST00000474539	CABS1	Q96KC9	395 aa		4.87	□□□□□ -1.63
CCNL1-215	ENST00000474539	UBE2O	Q9C0C9	1292 aa	Known RBP	4.87	□□□□□ -1.63
CCNL1-215	ENST00000474539	ASAH2	Q9NR71	780 aa		4.87	□□□□□ -1.63
CCNL1-215	ENST00000474539	COX16	Q9P0S2	106 aa		4.87	□□□□□ -1.63
CCNL1-215	ENST00000474539	CNOT8	Q9UFF9	292 aa	Known RBP	4.87	□□□□□ -1.63
CCNL1-215	ENST00000474539	ORC6	Q9Y5N6	252 aa		4.87	□□□□□ -1.63
CCNL1-215	ENST00000474539	SNX9	Q9Y5X1	595 aa		4.87	□□□□□ -1.63
CCNL1-215	ENST00000474539	NDUFB9	Q9Y6M9	179 aa		4.87	□□□□□ -1.63
CCNL1-215	ENST00000474539	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	CYP2D7	A0A087X1C5	515 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	ADM5	C9JUS6	153 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	NDUFAB1	O14561	156 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	KCNK3	O14649	394 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	IRF6	O14896	467 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	AP1G2	O75843	785 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	ADH1C	P00326	375 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	PRKAR2A	P13861	404 aa	Known RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	BCAR1	P56945	870 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	SATB1	Q01826	763 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	REST	Q13127	1097 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	PDK2	Q15119	407 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	MAPRE2	Q15555	327 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	TEDDM1	Q5T9Z0	273 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	NAPEPLD	Q6IQ20	393 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	SYN2	Q92777	582 aa	Predicted RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	KLRG1	Q96E93	195 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	HPDL	Q96IR7	371 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	TAAR1	Q96RJ0	339 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	P2RX7	Q99572	595 aa	Known RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	NAT9	Q9BTE0	207 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	SPON2	Q9BUD6	331 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	STK33	Q9BYT3	514 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	SLC39A8	Q9C0K1	460 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539		Q9H521	79 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	RABEP2	Q9H5N1	569 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	EML4	Q9HC35	981 aa	Known RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	CBX8	Q9HC52	389 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	AGO4	Q9HCK5	861 aa	Known RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	HHATL	Q9HCP6	504 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	LZTFL1	Q9NQ48	299 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	EPS15L1	Q9UBC2	864 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	TMCO1	Q9UM00	188 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	MAGED2	Q9UNF1	606 aa	Predicted RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	ZKSCAN5	Q9Y2L8	839 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	PKP3	Q9Y446	797 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	SQOR	Q9Y6N5	450 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	FAM187A	A6NFU0	413 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	LGALS16	A8MUM7	142 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	ACKR2	O00590	384 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	CKM	P06732	381 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	U2AF2	P26368	475 aa	Known RBP eCLIP	4.86	□□□□□ -1.63	1e-17	■■■□□ 17.6
CCNL1-215	ENST00000474539	KLRC1	P26715	233 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	STX2	P32856	288 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	GRK3	P35626	688 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	SERPINB9	P50453	376 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	FXR1	P51114	621 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	NCKAP1L	P55160	1127 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	IL9R	Q01113	521 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	DEUP1	Q05D60	604 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	PPP2R5C	Q13362	524 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	MESD	Q14696	234 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	ACAP1	Q15027	740 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	DUSP28	Q4G0W2	176 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	CELF3	Q5SZQ8	465 aa	Known RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	IFNL1	Q8IU54	200 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	PPTC7	Q8NI37	304 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	MCOLN3	Q8TDD5	553 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	CASP10	Q92851	521 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	RNPC3	Q96LT9	517 aa	Known RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	SLC9A7	Q96T83	725 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	CINP	Q9BW66	212 aa	Predicted RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	TMEM117	Q9H0C3	514 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	CNOT10	Q9H9A5	744 aa	Known RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	PSD3	Q9NYI0	1048 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	MAPK8IP1	Q9UQF2	711 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	DRG1	Q9Y295	367 aa	Known RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	FNDC3A	Q9Y2H6	1198 aa	Known RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	PCDHA5	Q9Y5H7	936 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	ROBO1	Q9Y6N7	1651 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539		M0R3G1	203 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	CLIC2	O15247	247 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	NFATC1	O95644	943 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	EOMES	O95936	686 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	ALPPL2	P10696	532 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	IGFBP4	P22692	258 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	FDFT1	P37268	417 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	NDUFV1	P49821	464 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	ABCE1	P61221	599 aa	Known RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	EXOSC10	Q01780	885 aa	Known RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	SGCG	Q13326	291 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	SEPT6	Q14141	434 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	ELF2	Q15723	593 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	C10orf120	Q5SQS8	335 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	FAM102A	Q5T9C2	384 aa	Predicted RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	DCLRE1A	Q6PJP8	1040 aa		4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	C11orf57	Q6ZUT1	292 aa	Predicted RBP	4.86	□□□□□ -1.63
CCNL1-215	ENST00000474539	MTSS1L	Q765P7	747 aa		4.86	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms