RNA–Protein interactions for RNA: YER029C

SMB1, Transcript of Core Sm protein Sm B, yeastyeast

Gene SMB1, Length 591 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMB1YER029C YCR087C-AP37263 153 aa0.94□□□□□ -2.26
SMB1YER029C IKI1P38874 309 aa0.94□□□□□ -2.26
SMB1YER029C IRC18P47056 224 aa0.94□□□□□ -2.26
SMB1YER029C MPA43P53583 542 aaPredicted RBP0.94□□□□□ -2.26
SMB1YER029C LSM7P53905 115 aaKnown RBP0.94□□□□□ -2.26
SMB1YER029C YDR274CP87283 123 aa0.94□□□□□ -2.26
SMB1YER029C HTB1P02293 131 aaKnown RBP0.93□□□□□ -2.26
SMB1YER029C HTB2P02294 131 aa0.93□□□□□ -2.26
SMB1YER029C RPL25P04456 142 aaKnown RBP0.93□□□□□ -2.26
SMB1YER029C QCR8P08525 94 aa0.93□□□□□ -2.26
SMB1YER029C URA5P13298 226 aaKnown RBP0.93□□□□□ -2.26
SMB1YER029C RFA3P26755 122 aaKnown RBP0.93□□□□□ -2.26
SMB1YER029C TMA19P35691 167 aaKnown RBP0.93□□□□□ -2.26
SMB1YER029C YER076CP40049 302 aa0.93□□□□□ -2.26
SMB1YER029C ERJ5P43613 295 aaPredicted RBP0.93□□□□□ -2.26
SMB1YER029C SAY1P53324 424 aa0.93□□□□□ -2.26
SMB1YER029C ANT1Q06497 328 aa0.93□□□□□ -2.26
SMB1YER029C GPM2Q12008 311 aa0.93□□□□□ -2.26
SMB1YER029C FSF1Q12029 327 aaKnown RBP0.93□□□□□ -2.26
SMB1YER029C YRA1Q12159 226 aaKnown RBP0.93□□□□□ -2.26
SMB1YER029C SLH1P53327 1967 aaKnown RBP0.92□□□□□ -2.26
SMB1YER029C RPB3P16370 318 aaKnown RBP0.92□□□□□ -2.26
SMB1YER029C CBF1P17106 351 aa0.92□□□□□ -2.26
SMB1YER029C RPB4P20433 221 aaPredicted RBP0.92□□□□□ -2.26
SMB1YER029C ATP15P21306 62 aa0.92□□□□□ -2.26
SMB1YER029C MAG1P22134 296 aaKnown RBP0.92□□□□□ -2.26
SMB1YER029C YBR285WP38354 144 aa0.92□□□□□ -2.26
SMB1YER029C TRM5P38793 499 aa0.92□□□□□ -2.26
SMB1YER029C AIM25P47140 327 aa0.92□□□□□ -2.26
SMB1YER029C COG5P53951 403 aa0.92□□□□□ -2.26
SMB1YER029C YNG1Q08465 219 aa0.92□□□□□ -2.26
SMB1YER029C MDM32Q12171 622 aa0.92□□□□□ -2.26
SMB1YER029C ATG40Q99325 256 aa0.92□□□□□ -2.26
SMB1YER029C YLR236CA0A023PZG4 107 aa0.91□□□□□ -2.26
SMB1YER029C VAR1P02381 398 aa0.91□□□□□ -2.26
SMB1YER029C SIR2P06700 562 aa0.91□□□□□ -2.26
SMB1YER029C NTG1P31378 399 aa0.91□□□□□ -2.26
SMB1YER029C YKT6P36015 200 aaKnown RBP0.91□□□□□ -2.26
SMB1YER029C YBR209WP38311 105 aa0.91□□□□□ -2.26
SMB1YER029C HMF1P40037 129 aaKnown RBP0.91□□□□□ -2.26
SMB1YER029C KNH1P50112 268 aa0.91□□□□□ -2.26
SMB1YER029C POP3P53833 195 aaPredicted RBP0.91□□□□□ -2.26
SMB1YER029C IKI3Q06706 1349 aaKnown RBP0.9□□□□□ -2.26
SMB1YER029C RPL27AP0C2H6 136 aaKnown RBP0.9□□□□□ -2.27
SMB1YER029C AQY2P0CD90 149 aa0.9□□□□□ -2.27
SMB1YER029C MATALPHA2P0CY08 210 aa0.9□□□□□ -2.27
SMB1YER029C HMLALPHA2P0CY09 210 aa0.9□□□□□ -2.27
SMB1YER029C CKS1P20486 150 aaKnown RBP0.9□□□□□ -2.27
SMB1YER029C TFC1P32367 649 aa0.9□□□□□ -2.27
SMB1YER029C RFC4P40339 323 aaKnown RBP0.9□□□□□ -2.27
SMB1YER029C UBC7Q02159 165 aa0.9□□□□□ -2.27
SMB1YER029C YCL012CQ8J0M4 134 aa0.9□□□□□ -2.27
SMB1YER029C SHE2P36068 246 aaKnown RBP RIP-Chip data0.89□□□□□ -2.27not detected
SMB1YER029C OPY1P38271 328 aa0.89□□□□□ -2.27
SMB1YER029C MPC3P53311 146 aa0.89□□□□□ -2.27
SMB1YER029C CUS2P53830 285 aaPredicted RBP0.89□□□□□ -2.27
SMB1YER029C HNT1Q04344 158 aaKnown RBP0.89□□□□□ -2.27
SMB1YER029C GGA1Q06336 557 aa0.89□□□□□ -2.27
SMB1YER029C MSB2P32334 1306 aa0.89□□□□□ -2.27
SMB1YER029C OCH1P31755 480 aa0.88□□□□□ -2.27
SMB1YER029C KDX1P36005 433 aa0.88□□□□□ -2.27
SMB1YER029C TVP38P36164 337 aa0.88□□□□□ -2.27
SMB1YER029C VMA22P38784 181 aa0.88□□□□□ -2.27
SMB1YER029C TVP23P38962 199 aa0.88□□□□□ -2.27
SMB1YER029C MMS2P53152 137 aa0.88□□□□□ -2.27
SMB1YER029C NOP19P53317 196 aaPredicted RBP0.88□□□□□ -2.27
SMB1YER029C CUE4Q04201 117 aaPredicted RBP0.88□□□□□ -2.27
SMB1YER029C YMR226CQ05016 267 aaKnown RBP0.88□□□□□ -2.27
SMB1YER029C RAD28Q12021 506 aa0.88□□□□□ -2.27
SMB1YER029C YDL180WQ12301 547 aa0.88□□□□□ -2.27
SMB1YER029C MRS1P07266 363 aa0.87□□□□□ -2.27
SMB1YER029C SEC11P15367 167 aa0.87□□□□□ -2.27
SMB1YER029C PAN3P36102 679 aaPredicted RBP0.87□□□□□ -2.27
SMB1YER029C ERG10P41338 398 aaKnown RBP0.87□□□□□ -2.27
SMB1YER029C GET1P53192 235 aa0.87□□□□□ -2.27
SMB1YER029C GET4Q12125 312 aa0.87□□□□□ -2.27
SMB1YER029C ADF1Q2V2Q1 113 aa0.87□□□□□ -2.27
SMB1YER029C MBF1O14467 151 aaKnown RBP0.86□□□□□ -2.27
SMB1YER029C QCR7P00128 127 aa0.86□□□□□ -2.27
SMB1YER029C POR1P04840 283 aaKnown RBP0.86□□□□□ -2.27
SMB1YER029C SPO13P23624 291 aa0.86□□□□□ -2.27
SMB1YER029C YCR090CP25654 182 aaKnown RBP0.86□□□□□ -2.27
SMB1YER029C YPL073CP40323 161 aa0.86□□□□□ -2.27
SMB1YER029C CWC21Q03375 135 aaKnown RBP0.86□□□□□ -2.27
SMB1YER029C FUS2Q05670 677 aa0.86□□□□□ -2.27
SMB1YER029C ABP140Q08641 628 aaKnown RBP0.86□□□□□ -2.27
SMB1YER029C DGA1Q08650 418 aa0.86□□□□□ -2.27
SMB1YER029C YNL146C-AQ3E7Z1 64 aa0.86□□□□□ -2.27
SMB1YER029C ODC2Q99297 307 aa0.86□□□□□ -2.27
SMB1YER029C DUR1,2P32528 1835 aaKnown RBP0.86□□□□□ -2.27
SMB1YER029C CNB1P25296 175 aa0.85□□□□□ -2.27
SMB1YER029C ASF2P32448 525 aaPredicted RBP0.85□□□□□ -2.27
SMB1YER029C YEA4P40004 342 aa0.85□□□□□ -2.27
SMB1YER029C SER2P42941 309 aa0.85□□□□□ -2.27
SMB1YER029C ARP3P47117 449 aaKnown RBP0.85□□□□□ -2.27
SMB1YER029C YMR099CQ03161 297 aaKnown RBP0.85□□□□□ -2.27
SMB1YER029C MRPS17Q03246 237 aaPredicted RBP0.85□□□□□ -2.27
SMB1YER029C YOL014WQ08110 124 aa0.85□□□□□ -2.27
SMB1YER029C IGO2Q9P305 131 aa0.85□□□□□ -2.27
SMB1YER029C RAD9P14737 1309 aa0.85□□□□□ -2.27
Retrieved 100 of 5,963 RNA–protein pairs in 683.3 ms