RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 RAB1AP62820 205 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 ST5P78524 1137 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 TMED1Q13445 227 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 AUHQ13825 339 aaKnown RBP6.94□□□□□ -1.3
VPS29-210ENST00000552130 WTAPQ15007 396 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 FAM26FQ5R3K3 315 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 TANGO2Q6ICL3 276 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 ALKBH5Q6P6C2 394 aaKnown RBP6.94□□□□□ -1.3
VPS29-210ENST00000552130 KCNK18Q7Z418 384 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 GALNT7Q86SF2 657 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 SLC9B2Q86UD5 537 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 RIOX2Q8IUF8 465 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 SIRT2Q8IXJ6 389 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 CCDC170Q8IYT3 715 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 NGEFQ8N5V2 710 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 CEP70Q8NHQ1 597 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 GSDMBQ8TAX9 411 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 STT3BQ8TCJ2 826 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 TAF4BQ92750 862 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 FBXW5Q969U6 566 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 KREMEN1Q96MU8 473 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 MOGAT1Q96PD6 335 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 PIGSQ96S52 555 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 PDCD2LQ9BRP1 358 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 MXD3Q9BW11 206 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 BRIP1Q9BX63 1249 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 ZMAT3Q9HA38 289 aaKnown RBP6.94□□□□□ -1.3
VPS29-210ENST00000552130 GPR27Q9NS67 375 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 FEM1BQ9UK73 627 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 PCDHGB4Q9UN71 923 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 IRAK3Q9Y616 596 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 FLT1P17948 1338 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 ERICH4A6NGS2 130 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 CCDC154A6NI56 674 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 CCDC69A6NI79 296 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 AQP12BA6NM10 295 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 AP3D1O14617 1153 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 WNT9AO14904 365 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 N4BP3O15049 544 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 GUCA1CO95843 209 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 HDCP19113 662 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 HADHAP40939 763 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 SSR1P43307 286 aaKnown RBP6.93□□□□□ -1.3
VPS29-210ENST00000552130 RCAN1P53805 252 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 ZNF445P59923 1031 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 YBX1P67809 324 aaKnown RBP6.93□□□□□ -1.3
VPS29-210ENST00000552130 SRSF3P84103 164 aaKnown RBP6.93□□□□□ -1.3
VPS29-210ENST00000552130 FOXO4P98177 505 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 AMPD2Q01433 879 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 UBE3AQ05086 875 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 SEMA3AQ14563 771 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 SF3B3Q15393 1217 aaKnown RBP6.93□□□□□ -1.3
VPS29-210ENST00000552130 PAN2Q504Q3 1202 aaKnown RBP6.93□□□□□ -1.3
VPS29-210ENST00000552130 NOL9Q5SY16 702 aaKnown RBP6.93□□□□□ -1.3
VPS29-210ENST00000552130 LIN54Q6MZP7 749 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 PRRT2Q7Z6L0 340 aaPredicted RBP6.93□□□□□ -1.3
VPS29-210ENST00000552130 RTN4RL1Q86UN2 441 aaPredicted RBP6.93□□□□□ -1.3
VPS29-210ENST00000552130 CHD1LQ86WJ1 897 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 HERC6Q8IVU3 1022 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 UNC45BQ8IWX7 931 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.93□□□□□ -1.3
VPS29-210ENST00000552130 TMEFF1Q8IYR6 380 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 PLBD2Q8NHP8 589 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 RBM18Q96H35 190 aaKnown RBP6.93□□□□□ -1.3
VPS29-210ENST00000552130 C7orf25Q9BPX7 421 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 ZMAT4Q9H898 229 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 TMEM160Q9NX00 188 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 SRP68Q9UHB9 627 aaKnown RBP6.93□□□□□ -1.3
VPS29-210ENST00000552130 EDARQ9UNE0 448 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 NPFFR2Q9Y5X5 522 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 FHOD1Q9Y613 1164 aa6.93□□□□□ -1.3
VPS29-210ENST00000552130 HNRNPDLO14979 420 aaKnown RBP6.92□□□□□ -1.3
VPS29-210ENST00000552130 PHGDHO43175 533 aaKnown RBP6.92□□□□□ -1.3
VPS29-210ENST00000552130 TSPAN3O60637 253 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 MSCO60682 206 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 PLATP00750 562 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 RARBP10826 455 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 ALAS1P13196 640 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 CCR5P51681 352 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 SLC5A3P53794 718 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 SCRN1Q12765 414 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 ACVR2BQ13705 512 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 PPA1Q15181 289 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 UBE3CQ15386 1083 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 CCDC157Q569K6 752 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 ADGRF1Q5T601 910 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 SULT6B1Q6IMI4 303 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 NAA16Q6N069 864 aaPredicted RBP6.92□□□□□ -1.3
VPS29-210ENST00000552130 CNKSR3Q6P9H4 555 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 IL27RAQ6UWB1 636 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 PRPF39Q86UA1 669 aaKnown RBP6.92□□□□□ -1.3
VPS29-210ENST00000552130 CEP97Q8IW35 865 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 RPAP2Q8IXW5 612 aaPredicted RBP6.92□□□□□ -1.3
VPS29-210ENST00000552130 LRRC71Q8N4P6 559 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 USHBP1Q8N6Y0 703 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 UTP15Q8TED0 518 aaKnown RBP6.92□□□□□ -1.3
VPS29-210ENST00000552130 ANKS1AQ92625 1134 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 PPP1R9BQ96SB3 815 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 PTPN18Q99952 460 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 RANBP17Q9H2T7 1088 aaKnown RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms