RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-210	ENST00000485247	FIBP	O43427	364 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	SMARCA5	O60264	1052 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	KCNK5	O95279	499 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	FGR	P09769	529 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	LAMP2	P13473	410 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	RBM25	P49756	843 aa	Known RBP	6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	CLCN4	P51793	760 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	BCAR1	P56945	870 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	FAM189B	P81408	668 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	CYP27A1	Q02318	531 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	GHRHR	Q02643	423 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	HTR4	Q13639	388 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	GIT2	Q14161	759 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	WTAP	Q15007	396 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	PLCB4	Q15147	1175 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	MLF2	Q15773	248 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	AASDH	Q4L235	1098 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	SLC44A4	Q53GD3	710 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	ZBTB41	Q5SVQ8	909 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	GET4	Q7L5D6	327 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	TMEM173	Q86WV6	379 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	CELF5	Q8N6W0	485 aa	Known RBP	6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	SEPT1	Q8WYJ6	367 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	MAP4K1	Q92918	833 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	ISL2	Q96A47	359 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	TTC14	Q96N46	770 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	INPP4A	Q96PE3	977 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	PPP1R16B	Q96T49	567 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	DDX23	Q9BUQ8	820 aa	Known RBP	6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	EMILIN2	Q9BXX0	1053 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	SMARCAD1	Q9H4L7	1026 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	ELAC1	Q9H777	363 aa	Known RBP	6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	JMJD4	Q9H9V9	463 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	LTB4R2	Q9NPC1	389 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	PRMT8	Q9NR22	394 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	ECHDC1	Q9NTX5	307 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	ANAPC4	Q9UJX5	808 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	PCDHA2	Q9Y5H9	948 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	IRAK3	Q9Y616	596 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	PATJ	Q8NI35	1801 aa		6.1	□□□□□ -1.43
PTPN4-210	ENST00000485247	ZZEF1	O43149	2961 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	MIA3	Q5JRA6	1907 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	TMEM8B	A6NDV4	472 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	CYSRT1	A8MQ03	144 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	ANHX	E9PGG2	379 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	GCOM1	H8Y6P7	765 aa	Predicted RBP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	PPP1R11	O60927	126 aa	Predicted RBP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	ATP9A	O75110	1047 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	ZC3H11A	O75152	810 aa	Known RBP eCLIP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	LEFTY1	O75610	366 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	SSB	P05455	408 aa	Known RBP eCLIP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	FAM87A	P0C7U9	286 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	POLR2M	P0CAP2	368 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	NTF4	P34130	210 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	MAGEA9	P43362	315 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	IRAK1	P51617	712 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	PRKCQ	Q04759	706 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	MTAP	Q13126	283 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	SIM2	Q14190	667 aa	Predicted RBP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	SOWAHC	Q53LP3	525 aa	Predicted RBP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	CLLU1OS	Q5K130	101 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	ODR4	Q5SWX8	454 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	UBE3D	Q7Z6J8	389 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	DDX53	Q86TM3	631 aa	Known RBP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	WFDC3	Q8IUB2	231 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	SIRT2	Q8IXJ6	389 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	NME8	Q8N427	588 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	ZCCHC14	Q8WYQ9	949 aa	Known RBP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	SMG7	Q92540	1137 aa	Known RBP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	KLHL5	Q96PQ7	755 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	SENP7	Q9BQF6	1050 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	FAM126A	Q9BYI3	521 aa	Predicted RBP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	OSBPL6	Q9BZF3	934 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	CEP44	Q9C0F1	390 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	MAN1C1	Q9NR34	630 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	RXFP3	Q9NSD7	469 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	MAP3K20	Q9NYL2	800 aa	Known RBP	6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	FAM8A1	Q9UBU6	413 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	ADGRE2	Q9UHX3	823 aa		6.09	□□□□□ -1.43
PTPN4-210	ENST00000485247	GCN1	Q92616	2671 aa	Known RBP	6.09	□□□□□ -1.44
PTPN4-210	ENST00000485247	CEP295	Q9C0D2	2601 aa		6.09	□□□□□ -1.44
PTPN4-210	ENST00000485247	SMIM35	A0A1B0GVV1	85 aa		6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	INPPL1	O15357	1258 aa		6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	NCAM2	O15394	837 aa		6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	FOXD2	O60548	495 aa	Predicted RBP	6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	RNGTT	O60942	597 aa	Known RBP	6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	HMMR	O75330	724 aa		6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	RFPL2	O75678	378 aa		6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	STAM2	O75886	525 aa		6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	TOP3B	O95985	862 aa	Known RBP	6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	CNP	P09543	421 aa	Known RBP	6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	PARP1	P09874	1014 aa	Known RBP	6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	TDGF1	P13385	188 aa		6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	POLG	P54098	1239 aa	Predicted RBP	6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	SRSF5	Q13243	272 aa	Known RBP	6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	SF3A2	Q15428	464 aa	Known RBP	6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	CCDC6	Q16204	474 aa		6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	KIZ	Q2M2Z5	673 aa		6.08	□□□□□ -1.44
PTPN4-210	ENST00000485247	ASPRV1	Q53RT3	343 aa		6.08	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms