RNA–Protein interactions for RNA: ENST00000628915.2

R3HDM1-220, Transcript of R3H domain containing 1, humanhuman

TSL 5 BASIC

Gene R3HDM1, Length 4,325 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-220ENST00000628915 RINLQ6ZS11 566 aa4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 PIK3R5Q8WYR1 880 aa4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 PEX14O75381 377 aa4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 PRR29P0C7W0 189 aa4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 NBPF1Q3BBV0 1214 aa4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 MAP7D2Q96T17 732 aa4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 PAK3O75914 559 aaPredicted RBP4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 CCDC181Q5TID7 509 aa4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 CEP120Q8N960 986 aa4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 ATP1B4Q9UN42 357 aaPredicted RBP4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 LRRIQ1Q96JM4 1722 aa4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 EEA1Q15075 1411 aa4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 ANKRD13AQ8IZ07 590 aa4.91□□□□□ -1.62
R3HDM1-220ENST00000628915 GLI2P10070 1586 aa4.9□□□□□ -1.62
R3HDM1-220ENST00000628915 CCDC88BA6NC98 1476 aa4.9□□□□□ -1.62
R3HDM1-220ENST00000628915 NBPF11Q86T75 865 aa4.9□□□□□ -1.62
R3HDM1-220ENST00000628915 MPHOSPH10O00566 681 aaKnown RBP4.9□□□□□ -1.63
R3HDM1-220ENST00000628915 HDAC1Q13547 482 aaPredicted RBP4.9□□□□□ -1.63
R3HDM1-220ENST00000628915 SH3BP5O60239 455 aa4.9□□□□□ -1.63
R3HDM1-220ENST00000628915 MARCH6O60337 910 aa4.9□□□□□ -1.63
R3HDM1-220ENST00000628915 FXR2P51116 673 aaKnown RBP eCLIP4.9□□□□□ -1.63
R3HDM1-220ENST00000628915 TPD52L2O43399 206 aaKnown RBP4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 NAP1L1P55209 391 aaKnown RBP4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 APBB1IPQ7Z5R6 666 aaPredicted RBP4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 CCDC82Q8N4S0 544 aa4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 VGFO15240 615 aaPredicted RBP4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 DHX16O60231 1041 aaKnown RBP4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 NBPF20Q3BBV1 942 aa4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 RBM28Q9NW13 759 aaKnown RBP4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 CEP162Q5TB80 1403 aa4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 ANKRD62A6NC57 917 aa4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 GSE1Q14687 1217 aa4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 RUSC2Q8N2Y8 1516 aa4.89□□□□□ -1.63
R3HDM1-220ENST00000628915 SEMA3FQ13275 785 aa4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 PIP4P2Q8N4L2 257 aa4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 TRIM52Q96A61 297 aa4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.88□□□□□ -1.637e-7■■■■■ 81.3
R3HDM1-220ENST00000628915 RIPOR2Q9Y4F9 1068 aa4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 PPP4R3BQ5MIZ7 849 aa4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 KCNH8Q96L42 1107 aa4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 MAPKBP1O60336 1514 aa4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 TNIKQ9UKE5 1360 aa4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 KIF4AO95239 1232 aa4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 L1TD1Q5T7N2 865 aaKnown RBP4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 NUP160Q12769 1436 aa4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 PES1O00541 588 aaKnown RBP4.88□□□□□ -1.63
R3HDM1-220ENST00000628915 HMGN5P82970 282 aaKnown RBP4.87□□□□□ -1.63
R3HDM1-220ENST00000628915 PKD2Q13563 968 aa4.87□□□□□ -1.63
R3HDM1-220ENST00000628915 ZRSR2Q15696 482 aaKnown RBP4.87□□□□□ -1.63
R3HDM1-220ENST00000628915 ERCC6Q03468 1493 aa4.87□□□□□ -1.63
R3HDM1-220ENST00000628915 NBPF6Q5VWK0 638 aa4.87□□□□□ -1.63
R3HDM1-220ENST00000628915 NBPF5PQ86XG9 351 aaPredicted RBP4.87□□□□□ -1.63
R3HDM1-220ENST00000628915 NBPF4Q96M43 638 aa4.87□□□□□ -1.63
R3HDM1-220ENST00000628915 ISY1Q9ULR0 285 aaKnown RBP4.87□□□□□ -1.63
R3HDM1-220ENST00000628915 CUX1P39880 1505 aa4.87□□□□□ -1.63
R3HDM1-220ENST00000628915 ZNF500O60304 480 aaPredicted RBP4.86□□□□□ -1.63
R3HDM1-220ENST00000628915 TPM2P07951 284 aa4.86□□□□□ -1.63
R3HDM1-220ENST00000628915 NBPF9Q3BBW0 867 aa4.86□□□□□ -1.63
R3HDM1-220ENST00000628915 RGL3Q3MIN7 710 aa4.86□□□□□ -1.63
R3HDM1-220ENST00000628915 SMAP1Q8IYB5 467 aaPredicted RBP4.86□□□□□ -1.63
R3HDM1-220ENST00000628915 SUDS3Q9H7L9 328 aaPredicted RBP4.86□□□□□ -1.63
R3HDM1-220ENST00000628915 FRMD4BQ9Y2L6 1034 aa4.86□□□□□ -1.63
R3HDM1-220ENST00000628915 SH3BP1Q9Y3L3 701 aa4.86□□□□□ -1.63
R3HDM1-220ENST00000628915 FOXD4Q12950 439 aaPredicted RBP4.86□□□□□ -1.63
R3HDM1-220ENST00000628915 MAP2K1Q02750 393 aaPredicted RBP4.85□□□□□ -1.63
R3HDM1-220ENST00000628915 STK11IPQ8N1F8 1099 aa4.85□□□□□ -1.63
R3HDM1-220ENST00000628915 DDRGK1Q96HY6 314 aa4.85□□□□□ -1.63
R3HDM1-220ENST00000628915 DHX57Q6P158 1386 aaKnown RBP4.85□□□□□ -1.63
R3HDM1-220ENST00000628915 PRKAR2AP13861 404 aaKnown RBP4.85□□□□□ -1.63
R3HDM1-220ENST00000628915 PNMA2Q9UL42 364 aa4.85□□□□□ -1.63
R3HDM1-220ENST00000628915 UHRF1BP1LA0JNW5 1464 aa4.85□□□□□ -1.63
R3HDM1-220ENST00000628915 SYNJ2O15056 1496 aa4.85□□□□□ -1.63
R3HDM1-220ENST00000628915 DDX10Q13206 875 aaKnown RBP4.85□□□□□ -1.63
R3HDM1-220ENST00000628915 EGFL6Q8IUX8 553 aa4.85□□□□□ -1.63
R3HDM1-220ENST00000628915 ZCRB1Q8TBF4 217 aaKnown RBP4.85□□□□□ -1.63
R3HDM1-220ENST00000628915 POLA1P09884 1462 aaPredicted RBP4.84□□□□□ -1.63
R3HDM1-220ENST00000628915 ERICH4A6NGS2 130 aa4.84□□□□□ -1.63
R3HDM1-220ENST00000628915 PRDM4Q9UKN5 801 aa4.84□□□□□ -1.63
R3HDM1-220ENST00000628915 CTTNBP2Q8WZ74 1663 aa4.84□□□□□ -1.63
R3HDM1-220ENST00000628915 MTERF4Q7Z6M4 381 aaKnown RBP4.84□□□□□ -1.63
R3HDM1-220ENST00000628915 TMEM51Q9NW97 253 aa4.84□□□□□ -1.63
R3HDM1-220ENST00000628915 UTRNP46939 3433 aa4.84□□□□□ -1.63
R3HDM1-220ENST00000628915 HNRNPUQ00839 825 aaKnown RBP eCLIP4.84□□□□□ -1.64
R3HDM1-220ENST00000628915 GET4Q7L5D6 327 aaPredicted RBP4.84□□□□□ -1.64
R3HDM1-220ENST00000628915 OTUD6BQ8N6M0 293 aa4.84□□□□□ -1.64
R3HDM1-220ENST00000628915 TDO2P48775 406 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 CXorf38Q8TB03 319 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 TSHZ1Q6ZSZ6 1077 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 GPBP1L1Q9HC44 474 aaPredicted RBP4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 GRIN2BQ13224 1484 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 TNNT1P13805 278 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 MMP14P50281 582 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 CGNQ9P2M7 1197 aaKnown RBP4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 PPME1Q9Y570 386 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 NEFHP12036 1026 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 ZFYVE27Q5T4F4 411 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 B4GALNT3Q6L9W6 998 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 RPAINQ86UA6 219 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 CCDC125Q86Z20 511 aa4.83□□□□□ -1.64
R3HDM1-220ENST00000628915 HSCBQ8IWL3 235 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms