RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 BAZ1AQ9NRL2 1556 aaPredicted RBP13.99□□□□□ -0.17
SPG11-213ENST00000558988 ST8SIA5O15466 376 aa13.98□□□□□ -0.17
SPG11-213ENST00000558988 HDGFP51858 240 aaKnown RBP13.98□□□□□ -0.17
SPG11-213ENST00000558988 ZNF598Q86UK7 904 aaKnown RBP13.98□□□□□ -0.17
SPG11-213ENST00000558988 NBPF26B4DH59 902 aa13.97□□□□□ -0.17
SPG11-213ENST00000558988 ZPR1O75312 459 aa13.97□□□□□ -0.17
SPG11-213ENST00000558988 CADPS2Q86UW7 1296 aa13.97□□□□□ -0.17
SPG11-213ENST00000558988 STK17AQ9UEE5 414 aa13.96□□□□□ -0.17
SPG11-213ENST00000558988 ERCC6Q03468 1493 aa13.95□□□□□ -0.18
SPG11-213ENST00000558988 AAASQ9NRG9 546 aa13.95□□□□□ -0.18
SPG11-213ENST00000558988 BAZ1BQ9UIG0 1483 aaKnown RBP13.94□□□□□ -0.18
SPG11-213ENST00000558988 HMGXB3Q12766 1538 aa13.94□□□□□ -0.18
SPG11-213ENST00000558988 TNFRSF10AO00220 468 aa13.93□□□□□ -0.18
SPG11-213ENST00000558988 WFS1O76024 890 aa13.92□□□□□ -0.18
SPG11-213ENST00000558988 NUDT18Q6ZVK8 323 aa13.92□□□□□ -0.18
SPG11-213ENST00000558988 MROH2BQ7Z745 1585 aa13.92□□□□□ -0.18
SPG11-213ENST00000558988 ZNF697Q5TEC3 545 aa13.91□□□□□ -0.18
SPG11-213ENST00000558988 GDF9O60383 454 aa13.9□□□□□ -0.18
SPG11-213ENST00000558988 LIAT1Q6ZQX7 453 aa13.89□□□□□ -0.19
SPG11-213ENST00000558988 NESP48681 1621 aa13.89□□□□□ -0.19
SPG11-213ENST00000558988 CERKQ8TCT0 537 aa13.88□□□□□ -0.19
SPG11-213ENST00000558988 NECTIN2Q92692 538 aa13.88□□□□□ -0.19
SPG11-213ENST00000558988 PPEF1O14829 653 aaPredicted RBP13.87□□□□□ -0.19
SPG11-213ENST00000558988 SWT1Q5T5J6 900 aaKnown RBP13.87□□□□□ -0.19
SPG11-213ENST00000558988 PRIM1P49642 420 aaKnown RBP13.85□□□□□ -0.19
SPG11-213ENST00000558988 LOC100996750A0A140TA64 210 aa13.84□□□□□ -0.19
SPG11-213ENST00000558988 ANKLE1Q8NAG6 615 aa13.84□□□□□ -0.19
SPG11-213ENST00000558988 KRTAP4-6Q9BYQ5 205 aa13.84□□□□□ -0.19
SPG11-213ENST00000558988 PEG3Q9GZU2 1588 aa13.83□□□□□ -0.19
SPG11-213ENST00000558988 SLF2Q8IX21 1173 aa13.83□□□□□ -0.2
SPG11-213ENST00000558988 DACH1Q9UI36 760 aa13.83□□□□□ -0.2
SPG11-213ENST00000558988 PCDHB3Q9Y5E6 796 aa13.82□□□□□ -0.2
SPG11-213ENST00000558988 TLL1O43897 1013 aa13.81□□□□□ -0.2
SPG11-213ENST00000558988 BLOC1S3Q6QNY0 202 aa13.81□□□□□ -0.2
SPG11-213ENST00000558988 WIPF1O43516 503 aa13.8□□□□□ -0.2
SPG11-213ENST00000558988 INSM1Q01101 510 aaPredicted RBP13.8□□□□□ -0.2
SPG11-213ENST00000558988 NFX1Q12986 1120 aaKnown RBP13.8□□□□□ -0.2
SPG11-213ENST00000558988 CUX2O14529 1486 aa13.79□□□□□ -0.2
SPG11-213ENST00000558988 PDIA6Q15084 440 aa13.78□□□□□ -0.2
SPG11-213ENST00000558988 WIZO95785 1651 aa13.78□□□□□ -0.2
SPG11-213ENST00000558988 S1PR4O95977 384 aa13.77□□□□□ -0.21
SPG11-213ENST00000558988 GMPR2Q9P2T1 348 aaKnown RBP13.76□□□□□ -0.21
SPG11-213ENST00000558988 CDHR5Q9HBB8 845 aa13.75□□□□□ -0.21
SPG11-213ENST00000558988 C11orf95C9JLR9 678 aaPredicted RBP13.74□□□□□ -0.21
SPG11-213ENST00000558988 CRIPAKQ8N1N5 446 aa13.73□□□□□ -0.21
SPG11-213ENST00000558988 PRR14Q9BWN1 585 aa13.73□□□□□ -0.21
SPG11-213ENST00000558988 RBM27Q9P2N5 1060 aaKnown RBP13.73□□□□□ -0.21
SPG11-213ENST00000558988 LAMC3Q9Y6N6 1575 aa13.71□□□□□ -0.21
SPG11-213ENST00000558988 SLC4A3P48751 1232 aa13.7□□□□□ -0.22
SPG11-213ENST00000558988 PLA2G2CQ5R387 149 aa13.7□□□□□ -0.22
SPG11-213ENST00000558988 PKD2L1Q9P0L9 805 aa13.7□□□□□ -0.22
SPG11-213ENST00000558988 KIF21AQ7Z4S6 1674 aa13.69□□□□□ -0.22
SPG11-213ENST00000558988 GRXCR2A6NFK2 248 aa13.69□□□□□ -0.22
SPG11-213ENST00000558988 SPDYE16A6NNV3 312 aaPredicted RBP13.69□□□□□ -0.22
SPG11-213ENST00000558988 FOXC1Q12948 553 aa13.69□□□□□ -0.22
SPG11-213ENST00000558988 LCE2CQ5TA81 110 aa13.68□□□□□ -0.22
SPG11-213ENST00000558988 TTC13Q8NBP0 860 aa13.68□□□□□ -0.22
SPG11-213ENST00000558988 THOC2Q8NI27 1593 aaKnown RBP13.66□□□□□ -0.22
SPG11-213ENST00000558988 PDS5BQ9NTI5 1447 aa13.65□□□□□ -0.22
SPG11-213ENST00000558988 PADI6Q6TGC4 694 aa13.65□□□□□ -0.22
SPG11-213ENST00000558988 CADPSQ9ULU8 1353 aa13.64□□□□□ -0.23
SPG11-213ENST00000558988 AXIN1O15169 862 aa13.64□□□□□ -0.23
SPG11-213ENST00000558988 AVPP01185 164 aa13.64□□□□□ -0.23
SPG11-213ENST00000558988 RSF1Q96T23 1441 aaPredicted RBP13.64□□□□□ -0.23
SPG11-213ENST00000558988 LMOD2Q6P5Q4 547 aa13.61□□□□□ -0.23
SPG11-213ENST00000558988 EYA1Q99502 592 aa13.61□□□□□ -0.23
SPG11-213ENST00000558988 ADH1BP00325 375 aa13.6□□□□□ -0.23
SPG11-213ENST00000558988 OSBPP22059 807 aa13.6□□□□□ -0.23
SPG11-213ENST00000558988 TOR4AQ9NXH8 423 aa13.58□□□□□ -0.24
SPG11-213ENST00000558988 SLC6A16Q9GZN6 736 aa13.57□□□□□ -0.24
SPG11-213ENST00000558988 NPDC1Q9NQX5 325 aaPredicted RBP13.57□□□□□ -0.24
SPG11-213ENST00000558988 TOP2AP11388 1531 aaKnown RBP13.57□□□□□ -0.24
SPG11-213ENST00000558988 ACTN4O43707 911 aaKnown RBP13.56□□□□□ -0.24
SPG11-213ENST00000558988 CTC1Q2NKJ3 1217 aa13.56□□□□□ -0.24
SPG11-213ENST00000558988 MRC2Q9UBG0 1479 aa13.55□□□□□ -0.24
SPG11-213ENST00000558988 TERTO14746 1132 aaKnown RBP13.55□□□□□ -0.24
SPG11-213ENST00000558988 SMCPP49901 116 aaPredicted RBP13.54□□□□□ -0.24
SPG11-213ENST00000558988 CYP4X1Q8N118 509 aa13.53□□□□□ -0.24
SPG11-213ENST00000558988 FANCD2Q9BXW9 1451 aa13.53□□□□□ -0.24
SPG11-213ENST00000558988 CEP164Q9UPV0 1460 aa13.53□□□□□ -0.24
SPG11-213ENST00000558988 SNRPBP14678 240 aaKnown RBP13.51□□□□□ -0.25
SPG11-213ENST00000558988 KMT5BQ4FZB7 885 aa13.51□□□□□ -0.25
SPG11-213ENST00000558988 WDR62O43379 1518 aa13.49□□□□□ -0.25
SPG11-213ENST00000558988 CFTRP13569 1480 aa13.48□□□□□ -0.25
SPG11-213ENST00000558988 NR1I2O75469 434 aa13.47□□□□□ -0.25
SPG11-213ENST00000558988 CFHP08603 1231 aa13.47□□□□□ -0.25
SPG11-213ENST00000558988 FAM181BA6NEQ2 426 aa13.46□□□□□ -0.25
SPG11-213ENST00000558988 RPIAP49247 311 aa13.46□□□□□ -0.25
SPG11-213ENST00000558988 ATP13A2Q9NQ11 1180 aa13.45□□□□□ -0.26
SPG11-213ENST00000558988 DNAJB2P25686 324 aa13.44□□□□□ -0.26
SPG11-213ENST00000558988 CCDC88BA6NC98 1476 aa13.42□□□□□ -0.26
SPG11-213ENST00000558988 SUZ12Q15022 739 aaKnown RBP13.42□□□□□ -0.26
SPG11-213ENST00000558988 TMEM134Q9H6X4 195 aa13.42□□□□□ -0.26
SPG11-213ENST00000558988 CD2BP2O95400 341 aaKnown RBP13.41□□□□□ -0.26
SPG11-213ENST00000558988 SCUBE3Q8IX30 993 aa13.41□□□□□ -0.26
SPG11-213ENST00000558988 TRIM47Q96LD4 638 aa13.41□□□□□ -0.26
SPG11-213ENST00000558988 URB2Q14146 1524 aaKnown RBP13.4□□□□□ -0.26
SPG11-213ENST00000558988 ARIH1Q9Y4X5 557 aaPredicted RBP13.4□□□□□ -0.26
SPG11-213ENST00000558988 SPSB2Q99619 263 aa13.39□□□□□ -0.27
SPG11-213ENST00000558988 TTC24A2A3L6 582 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms