RNA–Protein interactions for RNA: ENST00000521216.5

SKP1-208, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SKP1, Length 899 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-208ENST00000521216 TMEM134Q9H6X4 195 aa11.09□□□□□ -0.63
SKP1-208ENST00000521216 BHMG1C9JSJ3 638 aaPredicted RBP11.08□□□□□ -0.64
SKP1-208ENST00000521216 KRTAP3-3Q9BYR6 98 aa11.08□□□□□ -0.64
SKP1-208ENST00000521216 KRTAP3-2Q9BYR7 98 aa11.08□□□□□ -0.64
SKP1-208ENST00000521216 GOLGA8CPA6NN73 597 aa11.07□□□□□ -0.64
SKP1-208ENST00000521216 DDX11L8A8MPP1 907 aa11.07□□□□□ -0.64
SKP1-208ENST00000521216 SWT1Q5T5J6 900 aaKnown RBP11.07□□□□□ -0.64
SKP1-208ENST00000521216 LAPTM4BQ86VI4 370 aa11.07□□□□□ -0.64
SKP1-208ENST00000521216 FAM217BQ9NTX9 383 aaPredicted RBP11.07□□□□□ -0.64
SKP1-208ENST00000521216 TMEM132AQ24JP5 1023 aa11.06□□□□□ -0.64
SKP1-208ENST00000521216 HRO43593 1189 aa11.05□□□□□ -0.64
SKP1-208ENST00000521216 RNF40O75150 1001 aa11.05□□□□□ -0.64
SKP1-208ENST00000521216 SAMD7Q7Z3H4 446 aa11.05□□□□□ -0.64
SKP1-208ENST00000521216 DDRGK1Q96HY6 314 aa11.05□□□□□ -0.64
SKP1-208ENST00000521216 ZFRQ96KR1 1074 aaKnown RBP11.05□□□□□ -0.64
SKP1-208ENST00000521216 SULF1Q8IWU6 871 aa11.04□□□□□ -0.64
SKP1-208ENST00000521216 RDH13Q8NBN7 331 aa11.04□□□□□ -0.64
SKP1-208ENST00000521216 BEGAINQ9BUH8 593 aa11.04□□□□□ -0.64
SKP1-208ENST00000521216 SLC4A3P48751 1232 aa11.03□□□□□ -0.64
SKP1-208ENST00000521216 RSPH4AQ5TD94 716 aa11□□□□□ -0.65
SKP1-208ENST00000521216 PLEKHG3A1L390 1219 aa10.99□□□□□ -0.65
SKP1-208ENST00000521216 SLF2Q8IX21 1173 aa10.99□□□□□ -0.65
SKP1-208ENST00000521216 ANKK1Q8NFD2 765 aa10.99□□□□□ -0.65
SKP1-208ENST00000521216 LRCH3Q96II8 777 aa10.99□□□□□ -0.65
SKP1-208ENST00000521216 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.98□□□□□ -0.65
SKP1-208ENST00000521216 ATP1B4Q9UN42 357 aaPredicted RBP10.98□□□□□ -0.65
SKP1-208ENST00000521216 CD46P15529 392 aa10.97□□□□□ -0.65
SKP1-208ENST00000521216 WNT2BQ93097 391 aa10.97□□□□□ -0.65
SKP1-208ENST00000521216 SLC10A3P09131 477 aa10.95□□□□□ -0.66
SKP1-208ENST00000521216 BCAMP50895 628 aa10.95□□□□□ -0.66
SKP1-208ENST00000521216 NUTM1Q86Y26 1132 aa10.95□□□□□ -0.66
SKP1-208ENST00000521216 RSPH6AQ9H0K4 717 aa10.93□□□□□ -0.66
SKP1-208ENST00000521216 PPP4CP60510 307 aa10.92□□□□□ -0.66
SKP1-208ENST00000521216 KCTD12Q96CX2 325 aaKnown RBP10.92□□□□□ -0.66
SKP1-208ENST00000521216 TBC1D2Q9BYX2 928 aa10.92□□□□□ -0.66
SKP1-208ENST00000521216 SOWAHBA6NEL2 793 aa10.91□□□□□ -0.66
SKP1-208ENST00000521216 CFHP08603 1231 aa10.91□□□□□ -0.66
SKP1-208ENST00000521216 GCGRP47871 477 aa10.91□□□□□ -0.66
SKP1-208ENST00000521216 SPIRE2Q8WWL2 714 aa10.91□□□□□ -0.66
SKP1-208ENST00000521216 POLR3EQ9NVU0 708 aa10.91□□□□□ -0.66
SKP1-208ENST00000521216 HPS5Q9UPZ3 1129 aa10.91□□□□□ -0.66
SKP1-208ENST00000521216 KDM4AO75164 1064 aa10.89□□□□□ -0.67
SKP1-208ENST00000521216 DIXDC1Q155Q3 683 aa10.89□□□□□ -0.67
SKP1-208ENST00000521216 MYSM1Q5VVJ2 828 aa10.88□□□□□ -0.67
SKP1-208ENST00000521216 NECTIN2Q92692 538 aa10.88□□□□□ -0.67
SKP1-208ENST00000521216 PCMTD1Q96MG8 357 aaPredicted RBP10.88□□□□□ -0.67
SKP1-208ENST00000521216 TSR3Q9UJK0 312 aaKnown RBP10.88□□□□□ -0.67
SKP1-208ENST00000521216 KMT5BQ4FZB7 885 aa10.87□□□□□ -0.67
SKP1-208ENST00000521216 SH3D19Q5HYK7 790 aa10.87□□□□□ -0.67
SKP1-208ENST00000521216 SKIV2LQ15477 1246 aaKnown RBP10.86□□□□□ -0.67
SKP1-208ENST00000521216 NDUFV2P19404 249 aa10.85□□□□□ -0.67
SKP1-208ENST00000521216 PTPN5P54829 565 aa10.85□□□□□ -0.67
SKP1-208ENST00000521216 THSD4Q6ZMP0 1018 aa10.85□□□□□ -0.67
SKP1-208ENST00000521216 PCDH10Q9P2E7 1040 aa10.85□□□□□ -0.67
SKP1-208ENST00000521216 MYT1LQ9UL68 1186 aa10.85□□□□□ -0.67
SKP1-208ENST00000521216 MOXD2PA6NHM9 499 aa10.84□□□□□ -0.67
SKP1-208ENST00000521216 FUT2Q10981 343 aa10.84□□□□□ -0.67
SKP1-208ENST00000521216 RIC3Q7Z5B4 369 aa10.84□□□□□ -0.67
SKP1-208ENST00000521216 PROCA1Q8NCQ7 364 aaPredicted RBP10.84□□□□□ -0.67
SKP1-208ENST00000521216 WBP1LQ9NX94 342 aa10.84□□□□□ -0.67
SKP1-208ENST00000521216 GTF3C3Q9Y5Q9 886 aa10.84□□□□□ -0.67
SKP1-208ENST00000521216 CLK2P49760 499 aaKnown RBP10.83□□□□□ -0.68
SKP1-208ENST00000521216 USP46P62068 366 aa10.83□□□□□ -0.68
SKP1-208ENST00000521216 CSPP1Q1MSJ5 1256 aa10.83□□□□□ -0.68
SKP1-208ENST00000521216 GOPCQ9HD26 462 aa10.83□□□□□ -0.68
SKP1-208ENST00000521216 GRIPAP1Q4V328 841 aa10.82□□□□□ -0.68
SKP1-208ENST00000521216 HOXA2O43364 376 aa10.81□□□□□ -0.68
SKP1-208ENST00000521216 APLP1P51693 650 aa10.81□□□□□ -0.68
SKP1-208ENST00000521216 HLA-CQ95604 372 aa10.81□□□□□ -0.68
SKP1-208ENST00000521216 PRR14Q9BWN1 585 aa10.81□□□□□ -0.68
SKP1-208ENST00000521216 ACTN4O43707 911 aaKnown RBP10.8□□□□□ -0.68
SKP1-208ENST00000521216 ATP6V1AP38606 617 aa10.8□□□□□ -0.68
SKP1-208ENST00000521216 GUCA2AQ02747 115 aa10.8□□□□□ -0.68
SKP1-208ENST00000521216 PUS10Q3MIT2 529 aaKnown RBP10.8□□□□□ -0.68
SKP1-208ENST00000521216 LIMD1Q9UGP4 676 aa10.8□□□□□ -0.68
SKP1-208ENST00000521216 FDX1P10109 184 aa10.79□□□□□ -0.68
SKP1-208ENST00000521216 RSBN1LQ6PCB5 846 aaPredicted RBP10.79□□□□□ -0.68
SKP1-208ENST00000521216 SPTLC1O15269 473 aa10.78□□□□□ -0.68
SKP1-208ENST00000521216 SPNS2Q8IVW8 549 aa10.78□□□□□ -0.68
SKP1-208ENST00000521216 PCDHB3Q9Y5E6 796 aa10.77□□□□□ -0.69
SKP1-208ENST00000521216 PCDHB15Q9Y5E8 787 aa10.77□□□□□ -0.69
SKP1-208ENST00000521216 NUTM2BA6NNL0 878 aaPredicted RBP10.75□□□□□ -0.69
SKP1-208ENST00000521216 NUTM2EB1AL46 878 aaPredicted RBP10.75□□□□□ -0.69
SKP1-208ENST00000521216 NUTM2DQ5VT03 806 aaPredicted RBP10.75□□□□□ -0.69
SKP1-208ENST00000521216 NUTM2AQ8IVF1 878 aaPredicted RBP10.75□□□□□ -0.69
SKP1-208ENST00000521216 MORN1Q5T089 497 aa10.74□□□□□ -0.69
SKP1-208ENST00000521216 RNF166Q96A37 237 aaPredicted RBP10.74□□□□□ -0.69
SKP1-208ENST00000521216 COPS2P61201 443 aa10.73□□□□□ -0.69
SKP1-208ENST00000521216 QPCTQ16769 361 aa10.73□□□□□ -0.69
SKP1-208ENST00000521216 CABLES1Q8TDN4 633 aa10.73□□□□□ -0.69
SKP1-208ENST00000521216 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.73□□□□□ -0.69
SKP1-208ENST00000521216 PCDHGC3Q9UN70 934 aa10.73□□□□□ -0.69
SKP1-208ENST00000521216 SLC27A5Q9Y2P5 690 aa10.73□□□□□ -0.69
SKP1-208ENST00000521216 C6orf229H3BNL8 230 aa10.72□□□□□ -0.69
SKP1-208ENST00000521216 GJA5P36382 358 aa10.72□□□□□ -0.69
SKP1-208ENST00000521216 BLOC1S3Q6QNY0 202 aa10.72□□□□□ -0.69
SKP1-208ENST00000521216 NYAP1Q6ZVC0 841 aa10.71□□□□□ -0.69
SKP1-208ENST00000521216 NR1I2O75469 434 aa10.7□□□□□ -0.7
SKP1-208ENST00000521216 SCUBE3Q8IX30 993 aa10.7□□□□□ -0.7
SKP1-208ENST00000521216 SYMPKQ92797 1274 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms