RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	KRTAP4-2	Q9BYR5	136 aa		4.49	□□□□□ -1.69
TTC3-214	ENST00000472398	METRN	Q9UJH8	293 aa		4.49	□□□□□ -1.69
TTC3-214	ENST00000472398	OS9	Q13438	667 aa	Predicted RBP	4.49	□□□□□ -1.69
TTC3-214	ENST00000472398	SIRT1	Q96EB6	747 aa		4.49	□□□□□ -1.69
TTC3-214	ENST00000472398	C2orf72	A6NCS6	295 aa		4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	PLEKHD1	A6NEE1	506 aa		4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	TRAK2	O60296	914 aa		4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	ONECUT3	O60422	494 aa	Predicted RBP	4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	SEC24B	O95487	1268 aa		4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	TMEM92	Q6UXU6	159 aa		4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	FOXD4L3	Q6VB84	417 aa	Predicted RBP	4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	NOL8	Q76FK4	1167 aa	Known RBP	4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	SPATA32	Q96LK8	384 aa		4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	SLC52A1	Q9NWF4	448 aa		4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	MYT1L	Q9UL68	1186 aa		4.48	□□□□□ -1.69
TTC3-214	ENST00000472398	SPDYE16	A6NNV3	312 aa	Predicted RBP	4.47	□□□□□ -1.69
TTC3-214	ENST00000472398		G3V3G9	751 aa		4.47	□□□□□ -1.69
TTC3-214	ENST00000472398	MCC	P23508	829 aa		4.47	□□□□□ -1.69
TTC3-214	ENST00000472398	FAM9B	Q8IZU0	186 aa		4.47	□□□□□ -1.69
TTC3-214	ENST00000472398	CHMP4B	Q9H444	224 aa	Known RBP	4.47	□□□□□ -1.69
TTC3-214	ENST00000472398	EMILIN3	Q9NT22	766 aa		4.47	□□□□□ -1.69
TTC3-214	ENST00000472398	PDIA6	Q15084	440 aa		4.47	□□□□□ -1.69
TTC3-214	ENST00000472398	HSP90AB4P	Q58FF6	505 aa		4.47	□□□□□ -1.69
TTC3-214	ENST00000472398	MARCH6	O60337	910 aa		4.46	□□□□□ -1.69
TTC3-214	ENST00000472398		Q6ZNB5	142 aa		4.46	□□□□□ -1.69
TTC3-214	ENST00000472398	PLPP6	Q8IY26	295 aa		4.46	□□□□□ -1.69
TTC3-214	ENST00000472398	IPO4	Q8TEX9	1081 aa	Known RBP	4.46	□□□□□ -1.69
TTC3-214	ENST00000472398	SEMA3E	O15041	775 aa		4.46	□□□□□ -1.7
TTC3-214	ENST00000472398	EVI5L	Q96CN4	794 aa		4.45	□□□□□ -1.7
TTC3-214	ENST00000472398	SUGT1	Q9Y2Z0	365 aa		4.45	□□□□□ -1.7
TTC3-214	ENST00000472398	PPME1	Q9Y570	386 aa		4.45	□□□□□ -1.7
TTC3-214	ENST00000472398	ZC3H4	Q9UPT8	1303 aa	Known RBP	4.45	□□□□□ -1.7
TTC3-214	ENST00000472398	SNPH	O15079	494 aa		4.45	□□□□□ -1.7
TTC3-214	ENST00000472398	SLC34A2	O95436	690 aa		4.45	□□□□□ -1.7
TTC3-214	ENST00000472398	OXER1	Q8TDS5	423 aa		4.45	□□□□□ -1.7
TTC3-214	ENST00000472398	ZMYND10	O75800	440 aa		4.44	□□□□□ -1.7
TTC3-214	ENST00000472398	ERICH6B	Q5W0A0	696 aa		4.44	□□□□□ -1.7
TTC3-214	ENST00000472398	SPTY2D1	Q68D10	685 aa	Predicted RBP	4.44	□□□□□ -1.7
TTC3-214	ENST00000472398	SMYD5	Q6GMV2	418 aa		4.44	□□□□□ -1.7
TTC3-214	ENST00000472398	ZNF662	Q6ZS27	426 aa		4.44	□□□□□ -1.7
TTC3-214	ENST00000472398	ANKRD13A	Q8IZ07	590 aa		4.44	□□□□□ -1.7
TTC3-214	ENST00000472398	KDM4C	Q9H3R0	1056 aa		4.44	□□□□□ -1.7
TTC3-214	ENST00000472398	RBM27	Q9P2N5	1060 aa	Known RBP	4.44	□□□□□ -1.7
TTC3-214	ENST00000472398	ZNF777	Q9ULD5	760 aa	Predicted RBP	4.44	□□□□□ -1.7
TTC3-214	ENST00000472398	AMOTL2	Q9Y2J4	779 aa		4.44	□□□□□ -1.7
TTC3-214	ENST00000472398	FTSJ3	Q8IY81	847 aa	Known RBP	4.44	□□□□□ -1.7
TTC3-214	ENST00000472398	FAM117A	Q9C073	453 aa		4.43	□□□□□ -1.7
TTC3-214	ENST00000472398	DPYSL4	O14531	572 aa		4.43	□□□□□ -1.7
TTC3-214	ENST00000472398	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	4.43	□□□□□ -1.7
TTC3-214	ENST00000472398	PTCD2	Q8WV60	388 aa	Known RBP	4.43	□□□□□ -1.7
TTC3-214	ENST00000472398	KRTAP4-9	Q9BYQ8	210 aa		4.43	□□□□□ -1.7
TTC3-214	ENST00000472398	KIAA1522	Q9P206	1035 aa	Predicted RBP	4.43	□□□□□ -1.7
TTC3-214	ENST00000472398	TPD52L2	O43399	206 aa	Known RBP	4.42	□□□□□ -1.7
TTC3-214	ENST00000472398	C3orf67	Q6ZVT6	689 aa		4.42	□□□□□ -1.7
TTC3-214	ENST00000472398	NME8	Q8N427	588 aa		4.42	□□□□□ -1.7
TTC3-214	ENST00000472398	MICAL1	Q8TDZ2	1067 aa		4.42	□□□□□ -1.7
TTC3-214	ENST00000472398	KRTAP3-3	Q9BYR6	98 aa		4.42	□□□□□ -1.7
TTC3-214	ENST00000472398	KRTAP3-2	Q9BYR7	98 aa		4.42	□□□□□ -1.7
TTC3-214	ENST00000472398	LCE1D	Q5T752	114 aa		4.41	□□□□□ -1.7
TTC3-214	ENST00000472398	MYH16	Q9H6N6	1097 aa		4.41	□□□□□ -1.7
TTC3-214	ENST00000472398	ANKRD62	A6NC57	917 aa		4.41	□□□□□ -1.7
TTC3-214	ENST00000472398		A6NJR5	290 aa		4.41	□□□□□ -1.7
TTC3-214	ENST00000472398	POTEJ	P0CG39	1038 aa		4.41	□□□□□ -1.7
TTC3-214	ENST00000472398	RAB11FIP3	O75154	756 aa		4.4	□□□□□ -1.7
TTC3-214	ENST00000472398	PTMA	P06454	111 aa	Known RBP	4.4	□□□□□ -1.7
TTC3-214	ENST00000472398	MLLT3	P42568	568 aa	Predicted RBP	4.4	□□□□□ -1.7
TTC3-214	ENST00000472398	FAM193A	P78312	1265 aa		4.4	□□□□□ -1.7
TTC3-214	ENST00000472398	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	4.4	□□□□□ -1.7
TTC3-214	ENST00000472398	LAPTM4A	Q15012	233 aa		4.4	□□□□□ -1.71
TTC3-214	ENST00000472398	GIMAP6	Q6P9H5	292 aa		4.4	□□□□□ -1.71
TTC3-214	ENST00000472398	TERF2IP	Q9NYB0	399 aa		4.4	□□□□□ -1.71
TTC3-214	ENST00000472398	KDM4F	A0A1W2PPD8	638 aa		4.39	□□□□□ -1.71
TTC3-214	ENST00000472398	PATL2	C9JE40	543 aa	Known RBP	4.39	□□□□□ -1.71
TTC3-214	ENST00000472398	GLIPR1L2	Q4G1C9	344 aa		4.39	□□□□□ -1.71
TTC3-214	ENST00000472398	HIRIP3	Q9BW71	556 aa	Predicted RBP	4.39	□□□□□ -1.71
TTC3-214	ENST00000472398	RPS6KL1	Q9Y6S9	549 aa		4.39	□□□□□ -1.71
TTC3-214	ENST00000472398	PEX14	O75381	377 aa		4.39	□□□□□ -1.71
TTC3-214	ENST00000472398	NEFM	P07197	916 aa		4.39	□□□□□ -1.71
TTC3-214	ENST00000472398	FOSB	P53539	338 aa		4.39	□□□□□ -1.71
TTC3-214	ENST00000472398	MAP3K9	P80192	1104 aa		4.39	□□□□□ -1.71
TTC3-214	ENST00000472398	CARNS1	A5YM72	827 aa		4.38	□□□□□ -1.71
TTC3-214	ENST00000472398	GPR37	O15354	613 aa		4.38	□□□□□ -1.71
TTC3-214	ENST00000472398	CANX	P27824	592 aa	Known RBP	4.38	□□□□□ -1.71
TTC3-214	ENST00000472398	FLII	Q13045	1269 aa		4.38	□□□□□ -1.71
TTC3-214	ENST00000472398	CDCA8	Q53HL2	280 aa		4.38	□□□□□ -1.71
TTC3-214	ENST00000472398	PPFIA4	O75335	1185 aa		4.38	□□□□□ -1.71
TTC3-214	ENST00000472398	GORAB	Q5T7V8	394 aa		4.38	□□□□□ -1.71
TTC3-214	ENST00000472398	POM121	Q96HA1	1249 aa		4.38	□□□□□ -1.71
TTC3-214	ENST00000472398	PLEKHG3	A1L390	1219 aa		4.37	□□□□□ -1.71
TTC3-214	ENST00000472398	TBC1D12	O60347	775 aa		4.37	□□□□□ -1.71
TTC3-214	ENST00000472398	EVI5	O60447	810 aa		4.37	□□□□□ -1.71
TTC3-214	ENST00000472398	FOXD4	Q12950	439 aa	Predicted RBP	4.37	□□□□□ -1.71
TTC3-214	ENST00000472398	MAP4K4	O95819	1239 aa	Predicted RBP	4.37	□□□□□ -1.71
TTC3-214	ENST00000472398	OSBP	P22059	807 aa		4.37	□□□□□ -1.71
TTC3-214	ENST00000472398	GTF2E1	P29083	439 aa	Predicted RBP	4.37	□□□□□ -1.71
TTC3-214	ENST00000472398	RALBP1	Q15311	655 aa		4.37	□□□□□ -1.71
TTC3-214	ENST00000472398	RBM26	Q5T8P6	1007 aa	Known RBP	4.37	□□□□□ -1.71
TTC3-214	ENST00000472398	FNBP4	Q8N3X1	1017 aa	Predicted RBP	4.37	□□□□□ -1.71
TTC3-214	ENST00000472398	KLHL42	Q9P2K6	505 aa		4.37	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms