RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 UBN2Q6ZU65 1347 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 DGKHQ86XP1 1220 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 MCUQ8NE86 351 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 C9orf43Q8TAL5 461 aaPredicted RBP5.68□□□□□ -1.5
USF3-202ENST00000478658 SLC7A3Q8WY07 619 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 DLG3Q92796 817 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 RERGLQ9H628 205 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 CD209Q9NNX6 404 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 PRDM8Q9NQV8 689 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 INTS9Q9NV88 658 aaKnown RBP5.68□□□□□ -1.5
USF3-202ENST00000478658 SUCOQ9UBS9 1254 aaKnown RBP5.68□□□□□ -1.5
USF3-202ENST00000478658 PHF8Q9UPP1 1060 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 KLHL20Q9Y2M5 609 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 POLR1DQ9Y2S0 133 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 ADGRA3Q8IWK6 1321 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 MAGEB3O15480 346 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 CYB5BO43169 146 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 PCSK2P16519 638 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 IL12RB1P42701 662 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 SEMA3FQ13275 785 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 HDAC1Q13547 482 aaPredicted RBP5.68□□□□□ -1.5
USF3-202ENST00000478658 BBS9Q3SYG4 887 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 SLFNL1Q499Z3 407 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 MON1BQ7L1V2 547 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 EPM2AIP1Q7L775 607 aaPredicted RBP5.68□□□□□ -1.5
USF3-202ENST00000478658 ADAT2Q7Z6V5 191 aaKnown RBP5.68□□□□□ -1.5
USF3-202ENST00000478658 AP3S1Q92572 193 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 SLC9A6Q92581 669 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 COA7Q96BR5 231 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 CAPS2Q9BXY5 557 aa5.68□□□□□ -1.5
USF3-202ENST00000478658 PPARGC1AQ9UBK2 798 aaKnown RBP5.68□□□□□ -1.5
USF3-202ENST00000478658 WASLO00401 505 aaPredicted RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 DDX3YO15523 660 aaKnown RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 MICAL2O94851 1124 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 PGAM1P18669 254 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 CDH13P55290 713 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 DLG1Q12959 904 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 BORAQ6PGQ7 559 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 MB21D1Q8N884 522 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 RIN3Q8TB24 985 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 SLC9A7Q96T83 725 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 IFNKQ9P0W0 207 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 NOB1Q9ULX3 412 aaKnown RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 RNF103O00237 685 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 NFIBO00712 420 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 IFNB1P01574 187 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 HIST1H2ABP04908 130 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 ERCC1P07992 297 aaPredicted RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 ZSCAN22P10073 491 aaPredicted RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 GCSHP23434 173 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 SLC1A4P43007 532 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 GEMIN4P57678 1058 aaKnown RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 EXOSC6Q5RKV6 272 aaKnown RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 HLA-DQA1Q5Y7H0 255 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 HIST3H2AQ7L7L0 130 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 LRRC8AQ8IWT6 810 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 DENND6BQ8NEG7 585 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 THRSPQ92748 146 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 HIST1H2ACQ93077 130 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 TCEAL3Q969E4 200 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 CDRT15Q96T59 188 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 NELFAQ9H3P2 528 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 SP110Q9HB58 689 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 A0A1W2PQ72 361 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 CFLARO15519 480 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 TCF4P15884 667 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 ELK3P41970 407 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 DBPQ10586 325 aaPredicted RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 RESTQ13127 1097 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 PDIA6Q15084 440 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 PTPN21Q16825 1174 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 GRAMD1BQ3KR37 738 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 TIGD2Q4W5G0 525 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 ARMC4Q5T2S8 1044 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 ZNF227Q86WZ6 799 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 CCDC103Q8IW40 242 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 IFNL2Q8IZJ0 200 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 ZBTB21Q9ULJ3 1066 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 EPCAMP16422 314 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 CHRNB4P30926 498 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 IREB2P48200 963 aaKnown RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 PPP3CCP48454 512 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 MYL7Q01449 175 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 CHRNB3Q05901 458 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 MZT2BQ6NZ67 158 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 SNX32Q86XE0 403 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 PDCD6IPQ8WUM4 868 aaKnown RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 MYLPFQ96A32 169 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 MRPL1Q9BYD6 325 aaKnown RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 LATS2Q9NRM7 1088 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 MAD2L2Q9UI95 211 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 TMPRSS11EQ9UL52 423 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 SLC33A1O00400 549 aaPredicted RBP5.67□□□□□ -1.5
USF3-202ENST00000478658 AREL1O15033 823 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 ZMYND10O75800 440 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 NPR3P17342 541 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 GTF2IRD2BQ6EKJ0 949 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 GTF2IRD2Q86UP8 949 aa5.67□□□□□ -1.5
USF3-202ENST00000478658 REXO1Q8N1G1 1221 aaKnown RBP5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms