RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 SCGNO76038 276 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 SEC31AO94979 1220 aaKnown RBP12.65□□□□□ -0.38
PCF11-201ENST00000298281 PTPN1P18031 435 aaKnown RBP12.65□□□□□ -0.38
PCF11-201ENST00000298281 HOXA13P31271 388 aaPredicted RBP12.65□□□□□ -0.38
PCF11-201ENST00000298281 C6orf10Q5SRN2 563 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 TADA2AO75478 443 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 DEFA1P59665 94 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 DEFA3P59666 94 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 LRRC49Q8IUZ0 686 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 MRPL48Q96GC5 212 aaKnown RBP12.65□□□□□ -0.38
PCF11-201ENST00000298281 SPACA7Q96KW9 195 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 ANAPC2Q9UJX6 822 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 LINC00854A0A1B0GVQ3 168 aa12.65□□□□□ -0.39
PCF11-201ENST00000298281 GSTM1P09488 218 aa12.65□□□□□ -0.39
PCF11-201ENST00000298281 QARSP47897 775 aaKnown RBP12.65□□□□□ -0.39
PCF11-201ENST00000298281 OLFML2BQ68BL8 750 aa12.65□□□□□ -0.39
PCF11-201ENST00000298281 TMEM270Q6UE05 265 aa12.65□□□□□ -0.39
PCF11-201ENST00000298281 ZNF560Q96MR9 790 aa12.65□□□□□ -0.39
PCF11-201ENST00000298281 ELAC2Q9BQ52 826 aaKnown RBP12.65□□□□□ -0.39
PCF11-201ENST00000298281 ERAP1Q9NZ08 941 aa12.65□□□□□ -0.39
PCF11-201ENST00000298281 ZFP69BQ9UJL9 534 aa12.65□□□□□ -0.39
PCF11-201ENST00000298281 LSM7Q9UK45 103 aaKnown RBP12.65□□□□□ -0.39
PCF11-201ENST00000298281 PALMO75781 387 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 ACADMP11310 421 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 PSMC5P62195 406 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 PFKFB3Q16875 520 aaPredicted RBP12.64□□□□□ -0.39
PCF11-201ENST00000298281 CAPRIN2Q6IMN6 1127 aaKnown RBP12.64□□□□□ -0.39
PCF11-201ENST00000298281 BPIFA3Q9BQP9 254 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 NFKBIZQ9BYH8 718 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 PTCH1Q13635 1447 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 AGRPO00253 132 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 GH2P01242 217 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 MZF1P28698 734 aaPredicted RBP12.64□□□□□ -0.39
PCF11-201ENST00000298281 SCNN1BP51168 640 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 FAM117BQ6P1L5 589 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 MACC1Q6ZN28 852 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 RHOT1Q8IXI2 618 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 RUBCNQ92622 972 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 PPP1R2P1Q96PQ5 205 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 TLR7Q9NYK1 1049 aaKnown RBP12.64□□□□□ -0.39
PCF11-201ENST00000298281 MYO1CO00159 1063 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 CYP2E1P05181 493 aaPredicted RBP12.64□□□□□ -0.39
PCF11-201ENST00000298281 GUCY1A2P33402 732 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 ABCE1P61221 599 aaKnown RBP12.64□□□□□ -0.39
PCF11-201ENST00000298281 TWF1Q12792 350 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 KNOP1Q1ED39 458 aaKnown RBP12.64□□□□□ -0.39
PCF11-201ENST00000298281 DPP10Q8N608 796 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 CNBD2Q96M20 576 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 XPO6Q96QU8 1125 aaKnown RBP12.64□□□□□ -0.39
PCF11-201ENST00000298281 SYNMO15061 1565 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 USP17L5A8MUK1 530 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 PRKAB2O43741 272 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 P4HBP07237 508 aaKnown RBP12.64□□□□□ -0.39
PCF11-201ENST00000298281 AP1S2P56377 157 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 SLC7A5Q01650 507 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 TIPINQ9BVW5 301 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 LATS2Q9NRM7 1088 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 EFCAB6Q5THR3 1501 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 CDC25AP30304 524 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 BCAR1P56945 870 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 IMPAD1Q9NX62 359 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 KRT16P08779 473 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 VAMP7P51809 220 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 MIGA2Q7L4E1 593 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 POLR1DQ9Y2S0 133 aa12.64□□□□□ -0.39
PCF11-201ENST00000298281 AP3D1O14617 1153 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 ITGA3P26006 1051 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 CLCN6P51797 869 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 ZNF302Q9NR11 478 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 ABHD10Q9NUJ1 306 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 TSC22D4Q9Y3Q8 395 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 MYO5CQ9NQX4 1742 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 NCAPD2Q15021 1401 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 PSMD3O43242 534 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 CHI3L1P36222 383 aaPredicted RBP12.63□□□□□ -0.39
PCF11-201ENST00000298281 HSD17B4P51659 736 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 PTPN12Q05209 780 aaKnown RBP12.63□□□□□ -0.39
PCF11-201ENST00000298281 KCNH2Q12809 1159 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 PLCL1Q15111 1095 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 NFIL3Q16649 462 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 THAP11Q96EK4 314 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 TNIP3Q96KP6 325 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 STRBPQ96SI9 672 aaKnown RBP12.63□□□□□ -0.39
PCF11-201ENST00000298281 OLFM1Q99784 485 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 TRPC4Q9UBN4 977 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 MAPK9P45984 424 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 VSNL1P62760 191 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 SLC44A2Q8IWA5 706 aaPredicted RBP12.63□□□□□ -0.39
PCF11-201ENST00000298281 IQCF2Q8IXL9 164 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 AHCYL2Q96HN2 611 aaKnown RBP12.63□□□□□ -0.39
PCF11-201ENST00000298281 S100A13Q99584 98 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 TSPAN9O75954 239 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 HAUS5O94927 633 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 MCCD1P59942 119 aaPredicted RBP12.63□□□□□ -0.39
PCF11-201ENST00000298281 TAF13Q15543 124 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 ASAP3Q8TDY4 903 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 DYNLL2Q96FJ2 89 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 PIM2Q9P1W9 311 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 SLC9A2Q9UBY0 812 aa12.63□□□□□ -0.39
PCF11-201ENST00000298281 ROR1Q01973 937 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms