RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 PPP1R2P41236 205 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 DCLRE1AQ6PJP8 1040 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 MICALL1Q8N3F8 863 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 BEST2Q8NFU1 509 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 MAFAQ8NHW3 353 aaPredicted RBP22.01■■□□□ 1.11
PTCD3-220ENST00000627371 HASPINQ8TF76 798 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 HERC2P3Q9BVR0 1158 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 NGRNQ9NPE2 291 aaKnown RBP22.01■■□□□ 1.11
PTCD3-220ENST00000627371 ENTPD7Q9NQZ7 604 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 SF3B1O75533 1304 aaKnown RBP eCLIP22.01■■□□□ 1.114e-7■■■■■ 86.2
PTCD3-220ENST00000627371 CTSAP10619 480 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 MCM4P33991 863 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 STIM1Q13586 685 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 SURF1Q15526 300 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 EDRF1Q3B7T1 1238 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 PLPP4Q5VZY2 271 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 CENPPQ6IPU0 288 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 TMC7Q7Z402 723 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 RDH13Q8NBN7 331 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 C3orf58Q8NDZ4 430 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 MICAL1Q8TDZ2 1067 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 PDE11AQ9HCR9 933 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 PCDHGC5Q9Y5F6 944 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 PRUNE2Q8WUY3 3088 aa22■■□□□ 1.11
PTCD3-220ENST00000627371 GUCY2FP51841 1108 aa21.99■■□□□ 1.11
PTCD3-220ENST00000627371 CYP24A1Q07973 514 aa21.99■■□□□ 1.11
PTCD3-220ENST00000627371 SMC1AQ14683 1233 aaKnown RBP21.99■■□□□ 1.11
PTCD3-220ENST00000627371 BMS1Q14692 1282 aaKnown RBP21.99■■□□□ 1.11
PTCD3-220ENST00000627371 CD300LGQ6UXG3 332 aa21.99■■□□□ 1.11
PTCD3-220ENST00000627371 TMEM130Q8N3G9 435 aa21.99■■□□□ 1.11
PTCD3-220ENST00000627371 GPR62Q9BZJ7 368 aa21.99■■□□□ 1.11
PTCD3-220ENST00000627371 PSMA7O14818 248 aa21.98■■□□□ 1.11
PTCD3-220ENST00000627371 CD44P16070 742 aaKnown RBP21.98■■□□□ 1.11
PTCD3-220ENST00000627371 NR2F2P24468 414 aa21.98■■□□□ 1.11
PTCD3-220ENST00000627371 IGFBP6P24592 240 aaPredicted RBP21.98■■□□□ 1.11
PTCD3-220ENST00000627371 RPL13P26373 211 aaKnown RBP21.98■■□□□ 1.11
PTCD3-220ENST00000627371 ELAVL2Q12926 359 aaKnown RBP21.98■■□□□ 1.11
PTCD3-220ENST00000627371 PSMD6Q15008 389 aa21.98■■□□□ 1.11
PTCD3-220ENST00000627371 TCEAL5Q5H9L2 206 aa21.98■■□□□ 1.11
PTCD3-220ENST00000627371 PPP2R3CQ969Q6 453 aa21.98■■□□□ 1.11
PTCD3-220ENST00000627371 DHTKD1Q96HY7 919 aaPredicted RBP21.98■■□□□ 1.11
PTCD3-220ENST00000627371 MFSD14AQ96MC6 490 aa21.98■■□□□ 1.11
PTCD3-220ENST00000627371 IRAK3Q9Y616 596 aa21.98■■□□□ 1.11
PTCD3-220ENST00000627371 BRWD1Q9NSI6 2320 aa21.98■■□□□ 1.11
PTCD3-220ENST00000627371 PPP1R3GB7ZBB8 358 aa21.97■■□□□ 1.11
PTCD3-220ENST00000627371 URODP06132 367 aa21.97■■□□□ 1.11
PTCD3-220ENST00000627371 CASP4P49662 377 aa21.97■■□□□ 1.11
PTCD3-220ENST00000627371 TFAMQ00059 246 aaKnown RBP21.97■■□□□ 1.11
PTCD3-220ENST00000627371 LRRC63Q05C16 580 aa21.97■■□□□ 1.11
PTCD3-220ENST00000627371 CCDC85BQ15834 202 aaPredicted RBP21.97■■□□□ 1.11
PTCD3-220ENST00000627371 TAS1R1Q7RTX1 841 aa21.97■■□□□ 1.11
PTCD3-220ENST00000627371 CACTINQ8WUQ7 758 aaKnown RBP21.97■■□□□ 1.11
PTCD3-220ENST00000627371 TSG101Q99816 390 aa21.97■■□□□ 1.11
PTCD3-220ENST00000627371 CHST7Q9NS84 486 aa21.97■■□□□ 1.11
PTCD3-220ENST00000627371 DPP3Q9NY33 737 aa21.97■■□□□ 1.11
PTCD3-220ENST00000627371 FRMD4BQ9Y2L6 1034 aa21.97■■□□□ 1.11
PTCD3-220ENST00000627371 ANO9A1A5B4 782 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 C2orf71A6NGG8 1288 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 HIDE1A8MVS5 230 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 TULP1O00294 542 aaPredicted RBP21.96■■□□□ 1.11
PTCD3-220ENST00000627371 MAPK13O15264 365 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 TRAPPC3O43617 180 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 CCNE1P24864 410 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 GLUD2P49448 558 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 PMS1P54277 932 aaKnown RBP21.96■■□□□ 1.11
PTCD3-220ENST00000627371 DSG1Q02413 1049 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 ADAM9Q13443 819 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 PTPN14Q15678 1187 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 USP41Q3LFD5 358 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 C9orf57Q5W0N0 161 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 CEP135Q66GS9 1140 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 ADGRD2Q7Z7M1 963 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 WDR49Q8IV35 697 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 MRPL43Q8N983 215 aaKnown RBP21.96■■□□□ 1.11
PTCD3-220ENST00000627371 PPM1EQ8WY54 764 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 FNBP1Q96RU3 617 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 INTS13Q9NVM9 706 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 SSX2IPQ9Y2D8 614 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 NUB1Q9Y5A7 615 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 PTPRJQ12913 1337 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 TSC2P49815 1807 aa21.96■■□□□ 1.11
PTCD3-220ENST00000627371 SPTBN5Q9NRC6 3674 aaKnown RBP21.95■■□□□ 1.11
PTCD3-220ENST00000627371 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.95■■□□□ 1.1
PTCD3-220ENST00000627371 TRIM49BA6NDI0 452 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 PIRO00625 290 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 CXCL14O95715 111 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 TMEM191BP0C7N4 346 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 DLATP10515 647 aaKnown RBP21.95■■□□□ 1.1
PTCD3-220ENST00000627371 BRCC3P46736 316 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 FAM171A1Q5VUB5 890 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 KIAA0319Q5VV43 1072 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 ANKRD40Q6AI12 368 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.95■■□□□ 1.1
PTCD3-220ENST00000627371 ZC3H3Q8IXZ2 948 aaKnown RBP21.95■■□□□ 1.1
PTCD3-220ENST00000627371 GPR65Q8IYL9 337 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 AUTS2Q8WXX7 1259 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 CCDC127Q96BQ5 260 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 ANKRD36BP1Q96IX9 119 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 CGRRF1Q99675 332 aa21.95■■□□□ 1.1
PTCD3-220ENST00000627371 MTMR12Q9C0I1 747 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms