RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 PDGFDQ9GZP0 370 aaPredicted RBP21.56■■□□□ 1.04
SHKBP1-225ENST00000600733 ROPN1Q9HAT0 212 aaPredicted RBP21.56■■□□□ 1.04
SHKBP1-225ENST00000600733 CD248Q9HCU0 757 aa21.56■■□□□ 1.04
SHKBP1-225ENST00000600733 PDLIM7Q9NR12 457 aa21.56■■□□□ 1.04
SHKBP1-225ENST00000600733 PTPRJQ12913 1337 aa21.56■■□□□ 1.04
SHKBP1-225ENST00000600733 RGS20O76081 388 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 KCNA2P16389 499 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 TNNI1P19237 187 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 PTK6Q13882 451 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 KYNUQ16719 465 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 CCDC60Q8IWA6 550 aaPredicted RBP21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 ARHGEF2Q92974 986 aaKnown RBP21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 POLR3FQ9H1D9 316 aaPredicted RBP21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 ZC3H11AO75152 810 aaKnown RBP eCLIP21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 DGAT1O75907 488 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 HLA-DRAP01903 254 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 RALAP11233 206 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 ACOT2P49753 483 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 TDRD10Q5VZ19 366 aaKnown RBP21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 CYB5D1Q6P9G0 228 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 P3H4Q92791 437 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 SENP7Q9BQF6 1050 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 SAMD15Q9P1V8 674 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 ARHGAP28Q9P2N2 729 aa21.55■■□□□ 1.04
SHKBP1-225ENST00000600733 ADCY8P40145 1251 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 SLC1A1P43005 524 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 LIG4P49917 911 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 NLRP11P59045 1033 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 PRKCEQ02156 737 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 CENPCQ03188 943 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 MON1BQ7L1V2 547 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 MCPH1Q8NEM0 835 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 GPRASP2Q96D09 838 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 C11orf70Q9BRQ4 267 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 CYP26B1Q9NR63 512 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 UMODL1Q5DID0 1318 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 TMEM120BA0PK00 339 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 TTC4O95801 387 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 GAS8O95995 478 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 ATF2P15336 505 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 DSG3P32926 999 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 PIK3CAP42336 1068 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 ZACNQ401N2 412 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 WDR44Q5JSH3 913 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 FAM81BQ96LP2 452 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 FNBP1Q96RU3 617 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 MLXIPLQ9NP71 852 aa21.54■■□□□ 1.04
SHKBP1-225ENST00000600733 EXTL3O43909 919 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 CYP1A1P04798 512 aaPredicted RBP21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 MYBL1P10243 752 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 GHRP10912 638 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 GJC1P36383 396 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 TAS2R40P59535 323 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 ITIH4Q14624 930 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 DYDC1Q8WWB3 177 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 IFT74Q96LB3 600 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 SERPINB12Q96P63 405 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 ATP6V0A4Q9HBG4 840 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 ANAPC5Q9UJX4 755 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 CD2APQ9Y5K6 639 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 PROSCO94903 275 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 PSAPP07602 524 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 KLF1Q13351 362 aaPredicted RBP21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 MTERF2Q49AM1 385 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 VSTM1Q6UX27 236 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 ANKS1BQ7Z6G8 1248 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 PRUNE1Q86TP1 453 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 ZNF677Q86XU0 584 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 ATL2Q8NHH9 583 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 GRK7Q8WTQ7 553 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 MAIP1Q8WWC4 291 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 JPH1Q9HDC5 661 aaPredicted RBP21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 HOMER3Q9NSC5 361 aa21.53■■□□□ 1.04
SHKBP1-225ENST00000600733 THAP12O43422 761 aa21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 GJB6O95452 261 aa21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 VNN1O95497 513 aa21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 C4BPAP04003 597 aaKnown RBP21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 ACO1P21399 889 aaKnown RBP21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 MAN1A1P33908 653 aa21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 CLDN10P78369 228 aa21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 XRCC4Q13426 336 aa21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 SYDE1Q6ZW31 735 aaPredicted RBP21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 TAX1BP1Q86VP1 789 aa21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 TRIM11Q96F44 468 aa21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 SCLT1Q96NL6 688 aa21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 TRAIPQ9BWF2 469 aa21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 HAPLN2Q9GZV7 340 aa21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 APOBEC3GQ9HC16 384 aaKnown RBP21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 COL11A1P12107 1806 aaPredicted RBP21.52■■□□□ 1.04
SHKBP1-225ENST00000600733 DPEP1P16444 411 aa21.52■■□□□ 1.03
SHKBP1-225ENST00000600733 KCNA3P22001 575 aa21.52■■□□□ 1.03
SHKBP1-225ENST00000600733 ACTR2P61160 394 aa21.52■■□□□ 1.03
SHKBP1-225ENST00000600733 PSMD6Q15008 389 aa21.52■■□□□ 1.03
SHKBP1-225ENST00000600733 SNRNP48Q6IEG0 339 aaKnown RBP21.52■■□□□ 1.03
SHKBP1-225ENST00000600733 TMEM270Q6UE05 265 aa21.52■■□□□ 1.03
SHKBP1-225ENST00000600733 PARP9Q8IXQ6 854 aa21.52■■□□□ 1.03
SHKBP1-225ENST00000600733 SGSM3Q96HU1 749 aa21.52■■□□□ 1.03
SHKBP1-225ENST00000600733 ZBTB45Q96K62 511 aaPredicted RBP21.52■■□□□ 1.03
SHKBP1-225ENST00000600733 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.52■■□□□ 1.031e-8■■■■■ 45.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms