RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 IRF2BP1Q8IU81 584 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 SLC39A11Q8N1S5 342 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 RDH13Q8NBN7 331 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 RSPH1Q8WYR4 309 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 PLVAPQ9BX97 442 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 THAP9Q9H5L6 903 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 SPG21Q9NZD8 308 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 HSPBP1Q9NZL4 362 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 CNTN3Q9P232 1028 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 FAN1Q9Y2M0 1017 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 PRG3Q9Y2Y8 225 aaPredicted RBP16.27■□□□□ 0.2
TRIM28-207ENST00000597136 TULP1O00294 542 aaPredicted RBP16.26■□□□□ 0.19
TRIM28-207ENST00000597136 CETN3O15182 167 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 FGFR1OPO95684 399 aaKnown RBP16.26■□□□□ 0.19
TRIM28-207ENST00000597136 KCNE1P15382 129 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 CYP2J2P51589 502 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 TUSC3Q13454 348 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 CDKAL1Q5VV42 579 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 POF1BQ8WVV4 589 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 FAM84AQ96KN4 292 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 CEP63Q96MT8 703 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 C11orf84Q9BUA3 381 aaPredicted RBP16.26■□□□□ 0.19
TRIM28-207ENST00000597136 VN1R3Q9BXE9 311 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 MARCH5Q9NX47 278 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 PCDHGC5Q9Y5F6 944 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 GOLGA6L3A6NEY3 463 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 EXTL3O43909 919 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 ZNF18P17022 549 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 GUCY2FP51841 1108 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 ERVFC1P60507 584 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 ZBTB6Q15916 424 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 HSP90AA4PQ58FG1 418 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 JADE1Q6IE81 842 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 CBWD2Q8IUF1 395 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 GPD1LQ8N335 351 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 IGSF21Q96ID5 467 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 TMEM175Q9BSA9 504 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 PLEKHA5Q9HAU0 1116 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 MTCH2Q9Y6C9 303 aa16.26■□□□□ 0.19
TRIM28-207ENST00000597136 C5orf42Q9H799 3197 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 IRS1P35568 1242 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 CLCNKBP51801 687 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 TPM4P67936 248 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 PLCB3Q01970 1234 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 PPP2R3AQ06190 1150 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 KYAT1Q16773 422 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 SCARA3Q6AZY7 606 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 CD300LGQ6UXG3 332 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 TAS1R1Q7RTX1 841 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 FILIP1Q7Z7B0 1213 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 XXYLT1Q8NBI6 393 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 HASPINQ8TF76 798 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 KIF12Q96FN5 646 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 GAS2L1Q99501 681 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-207ENST00000597136 PDE11AQ9HCR9 933 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 TUBGCP4Q9UGJ1 667 aa16.25■□□□□ 0.19
TRIM28-207ENST00000597136 KIAA0391O15091 583 aaKnown RBP16.24■□□□□ 0.19
TRIM28-207ENST00000597136 EXOC3O60645 756 aa16.24■□□□□ 0.19
TRIM28-207ENST00000597136 AKAP3O75969 853 aa16.24■□□□□ 0.19
TRIM28-207ENST00000597136 LDHAP00338 332 aaKnown RBP16.24■□□□□ 0.19
TRIM28-207ENST00000597136 NFICP08651 508 aa16.24■□□□□ 0.19
TRIM28-207ENST00000597136 FOSL2P15408 326 aa16.24■□□□□ 0.19
TRIM28-207ENST00000597136 CASP4P49662 377 aa16.24■□□□□ 0.19
TRIM28-207ENST00000597136 UVSSAQ2YD98 709 aa16.24■□□□□ 0.19
TRIM28-207ENST00000597136 C3orf58Q8NDZ4 430 aa16.24■□□□□ 0.19
TRIM28-207ENST00000597136 FBXL18Q96ME1 805 aa16.24■□□□□ 0.19
TRIM28-207ENST00000597136 SLC16A3O15427 465 aaKnown RBP16.23■□□□□ 0.19
TRIM28-207ENST00000597136 ATP1A3P13637 1013 aa16.23■□□□□ 0.19
TRIM28-207ENST00000597136 POU3F3P20264 500 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-207ENST00000597136 CCDC85BQ15834 202 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-207ENST00000597136 UPP1Q16831 310 aa16.23■□□□□ 0.19
TRIM28-207ENST00000597136 TCP11X2Q5H9J9 407 aa16.23■□□□□ 0.19
TRIM28-207ENST00000597136 CEP135Q66GS9 1140 aa16.23■□□□□ 0.19
TRIM28-207ENST00000597136 FAM114A1Q8IWE2 563 aa16.23■□□□□ 0.19
TRIM28-207ENST00000597136 BRSK2Q8IWQ3 736 aa16.23■□□□□ 0.19
TRIM28-207ENST00000597136 EFCAB13Q8IY85 973 aa16.23■□□□□ 0.19
TRIM28-207ENST00000597136 TMEM169Q96HH4 297 aa16.23■□□□□ 0.19
TRIM28-207ENST00000597136 RBAKQ9NYW8 714 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-207ENST00000597136 FRMD4BQ9Y2L6 1034 aa16.23■□□□□ 0.19
TRIM28-207ENST00000597136 SPTBN5Q9NRC6 3674 aaKnown RBP16.23■□□□□ 0.19
TRIM28-207ENST00000597136 TCF20Q9UGU0 1960 aaKnown RBP16.23■□□□□ 0.19
TRIM28-207ENST00000597136 XIRP2A4UGR9 3374 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 ZNF233A6NK53 670 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 KCNJ18B7U540 433 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 KIF4AO95239 1232 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 GNA14O95837 355 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 EFEMP2O95967 443 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 CDK11BP21127 795 aaKnown RBP16.22■□□□□ 0.19
TRIM28-207ENST00000597136 PPM1AP35813 382 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 PSMC2P35998 433 aaKnown RBP16.22■□□□□ 0.19
TRIM28-207ENST00000597136 KRT17Q04695 432 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 KCNJ12Q14500 433 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 HSP90AA2PQ14568 343 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-207ENST00000597136 MICALL1Q8N3F8 863 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 AUTS2Q8WXX7 1259 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 PPM1EQ8WY54 764 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 MRPL38Q96DV4 380 aaKnown RBP16.22■□□□□ 0.19
TRIM28-207ENST00000597136 CNOT6LQ96LI5 555 aaKnown RBP16.22■□□□□ 0.19
TRIM28-207ENST00000597136 MKNK1Q9BUB5 465 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 COLEC11Q9BWP8 271 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms