RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ANO9A1A5B4 782 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 TRIM49BA6NDI0 452 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 PODXLO00592 558 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 EXTL3O43909 919 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 LRRN2O75325 713 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 SOD2P04179 222 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 MYL1P05976 194 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 CNPP09543 421 aaKnown RBP10.02□□□□□ -0.81
VPS35-206ENST00000565228 EPCAMP16422 314 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 SCP2P22307 547 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 TKTP29401 623 aaKnown RBP10.02□□□□□ -0.81
VPS35-206ENST00000565228 LRPAP1P30533 357 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 PLA2G5P39877 138 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 CYP2J2P51589 502 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 KCNQ1P51787 676 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 DLG4P78352 724 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 UBE3AQ05086 875 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 ADAM15Q13444 863 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 ALCAMQ13740 583 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 CAMK4Q16566 473 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 TIGD5Q53EQ6 642 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 SPATA1Q5VX52 437 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 SLFN12LQ6IEE8 588 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 ARMCX5Q6P1M9 558 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 C12orf56Q8IXR9 622 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 ELOA2Q8IYF1 753 aaPredicted RBP10.02□□□□□ -0.81
VPS35-206ENST00000565228 SYCP3Q8IZU3 236 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 RDH13Q8NBN7 331 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 SLC22A17Q8WUG5 538 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 FAM212AQ96EL1 285 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 KIF12Q96FN5 646 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 EEF2KMTQ96G04 330 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 TMEM169Q96HH4 297 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 KLHL5Q96PQ7 755 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 FAM193BQ96PV7 902 aaPredicted RBP10.02□□□□□ -0.81
VPS35-206ENST00000565228 IGFLR1Q9H665 355 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 TMEM206Q9H813 350 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 RPF1Q9H9Y2 349 aaKnown RBP10.02□□□□□ -0.81
VPS35-206ENST00000565228 PLEKHA5Q9HAU0 1116 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 ADAM28Q9UKQ2 775 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 BARX2Q9UMQ3 279 aaPredicted RBP10.02□□□□□ -0.81
VPS35-206ENST00000565228 NOTCH4Q99466 2003 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 UBE4BO95155 1302 aa10.02□□□□□ -0.81
VPS35-206ENST00000565228 PPP1R3GB7ZBB8 358 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 H3BQ06 376 aaPredicted RBP10.01□□□□□ -0.81
VPS35-206ENST00000565228 TMEM189-UBE2V1I3L0A0 370 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 BIN1O00499 593 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 PIRO00625 290 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 C2CD2LO14523 706 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 VNN2O95498 520 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 CXCL14O95715 111 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 FGFR3P22607 806 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 PPM1AP35813 382 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 AARSP49588 968 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS35-206ENST00000565228 YARSP54577 528 aaKnown RBP10.01□□□□□ -0.81
VPS35-206ENST00000565228 DSG1Q02413 1049 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 PSMD2Q13200 908 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 MORC3Q14149 939 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 C9orf57Q5W0N0 161 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 SYCE2Q6PIF2 218 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 DCLRE1AQ6PJP8 1040 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 TMC7Q7Z402 723 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 HACE1Q8IYU2 909 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 GPD1LQ8N335 351 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 C1orf127Q8N9H9 656 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.01□□□□□ -0.81
VPS35-206ENST00000565228 LNX1Q8TBB1 728 aaPredicted RBP10.01□□□□□ -0.81
VPS35-206ENST00000565228 RSPH1Q8WYR4 309 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 DDX27Q96GQ7 796 aaKnown RBP10.01□□□□□ -0.81
VPS35-206ENST00000565228 MSLNLQ96KJ4 702 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 MFSD14AQ96MC6 490 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 DUSP9Q99956 384 aaKnown RBP10.01□□□□□ -0.81
VPS35-206ENST00000565228 EXOC7Q9UPT5 735 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 TRAF3IP3Q9Y228 551 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 NME7Q9Y5B8 376 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 IRAK3Q9Y616 596 aa10.01□□□□□ -0.81
VPS35-206ENST00000565228 GOLGA6L4A6NEF3 574 aa10□□□□□ -0.81
VPS35-206ENST00000565228 GRXCR2A6NFK2 248 aa10□□□□□ -0.81
VPS35-206ENST00000565228 TEX28O15482 410 aa10□□□□□ -0.81
VPS35-206ENST00000565228 HCRTO43612 131 aa10□□□□□ -0.81
VPS35-206ENST00000565228 TBC1D4O60343 1298 aa10□□□□□ -0.81
VPS35-206ENST00000565228 AKAP3O75969 853 aa10□□□□□ -0.81
VPS35-206ENST00000565228 B3GAT3O94766 335 aa10□□□□□ -0.81
VPS35-206ENST00000565228 CST3P01034 146 aaPredicted RBP10□□□□□ -0.81
VPS35-206ENST00000565228 CDR1P51861 262 aa10□□□□□ -0.81
VPS35-206ENST00000565228 PPP2R3AQ06190 1150 aa10□□□□□ -0.81
VPS35-206ENST00000565228 CYP24A1Q07973 514 aa10□□□□□ -0.81
VPS35-206ENST00000565228 MRPL58Q14197 206 aaKnown RBP10□□□□□ -0.81
VPS35-206ENST00000565228 PTPROQ16827 1216 aa10□□□□□ -0.81
VPS35-206ENST00000565228 CSPP1Q1MSJ5 1256 aa10□□□□□ -0.81
VPS35-206ENST00000565228 FAM171A1Q5VUB5 890 aa10□□□□□ -0.81
VPS35-206ENST00000565228 LLGL2Q6P1M3 1020 aa10□□□□□ -0.81
VPS35-206ENST00000565228 ZC3H3Q8IXZ2 948 aaKnown RBP10□□□□□ -0.81
VPS35-206ENST00000565228 ADSSL1Q8N142 457 aa10□□□□□ -0.81
VPS35-206ENST00000565228 GUF1Q8N442 669 aaKnown RBP10□□□□□ -0.81
VPS35-206ENST00000565228 C12orf76Q8N812 135 aaPredicted RBP10□□□□□ -0.81
VPS35-206ENST00000565228 MICAL1Q8TDZ2 1067 aa10□□□□□ -0.81
VPS35-206ENST00000565228 TMEM174Q8WUU8 243 aa10□□□□□ -0.81
VPS35-206ENST00000565228 TMEM209Q96SK2 561 aa10□□□□□ -0.81
VPS35-206ENST00000565228 RTP3Q9BQQ7 232 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms