RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 ANKRD13CQ8N6S4 541 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 ZNF540Q8NDQ6 660 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 NOC3LQ8WTT2 800 aaKnown RBP8.03□□□□□ -1.12
HDAC3-216ENST00000523088 VPS50Q96JG6 964 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 FAM167AQ96KS9 214 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 CCDC17Q96LX7 622 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 CCDC138Q96M89 665 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 SECISBP2Q96T21 854 aaKnown RBP8.03□□□□□ -1.12
HDAC3-216ENST00000523088 RIOK1Q9BRS2 568 aaKnown RBP8.03□□□□□ -1.12
HDAC3-216ENST00000523088 HAUS8Q9BT25 410 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 HTATIP2Q9BUP3 242 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 KIAA1683Q9H0B3 1180 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 ASCC2Q9H1I8 757 aaPredicted RBP8.03□□□□□ -1.12
HDAC3-216ENST00000523088 C12orf49Q9H741 205 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 EHD2Q9NZN4 543 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 PCDHB13Q9Y5F0 798 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 ZNF532Q9HCE3 1301 aa8.03□□□□□ -1.12
HDAC3-216ENST00000523088 TTLL13PA6NNM8 815 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 USP17L15C9J2P7 530 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 USP17L13C9JLJ4 530 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 USP17L11C9JVI0 530 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 USP17L18D6R9N7 530 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 USP17L22D6RA61 530 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 USP17L17D6RBQ6 530 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 USP17L19D6RCP7 530 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 USP17L20D6RJB6 530 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 STX16-NPEPL1H3BU86 382 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 GCOM1H8Y6P7 765 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 PSMD9O00233 223 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 XPOTO43592 962 aaKnown RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 ADCY3O60266 1144 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 SLC34A2O95436 690 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 MYCP01106 439 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 HMGCRP04035 888 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 GLI1P08151 1106 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 MYZAPP0CAP1 466 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 CPA3P15088 417 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 SYN1P17600 705 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 CFL1P23528 166 aaKnown RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 TBXAS1P24557 533 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 PBLDP30039 288 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 ALDH3A1P30838 453 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 SOX6P35712 828 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 FLT3LGP49771 235 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 MTTPP55157 894 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 HERVK_113P62684 666 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 S100A12P80511 92 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 ACY1Q03154 408 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 USP17L24Q0WX57 530 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 BLMHQ13867 455 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 CYLC2Q14093 348 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 Q3ZCU0 254 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 KCNT1Q5JUK3 1230 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 DEPDC1Q5TB30 811 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 SIGIRRQ6IA17 410 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 FAM173BQ6P4H8 233 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 CNSTQ6PJW8 725 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 TMEM179Q6ZVK1 233 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 GALNT5Q7Z7M9 940 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 VPS36Q86VN1 386 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 FCHSD1Q86WN1 690 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 C7orf61Q8IZ16 206 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 CADM3Q8N126 398 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 LSMEM1Q8N8F7 131 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 ZNF579Q8NAF0 562 aaKnown RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 ANKLE1Q8NAG6 615 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 GPRC5AQ8NFJ5 357 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 OR6C4Q8NGE1 309 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 OR52K1Q8NGK4 314 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 ENKURQ8TC29 256 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 BCL7CQ8WUZ0 217 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 HERVK_113Q902F9 699 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 LPAR1Q92633 364 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 GFM2Q969S9 779 aaKnown RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 CCDC42Q96M95 316 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 MFSD14AQ96MC6 490 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 TRAPPC9Q96Q05 1148 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 COQ7Q99807 217 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 LSM14BQ9BX40 385 aaKnown RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 NUF2Q9BZD4 464 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 EHD1Q9H4M9 534 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 ZNF287Q9HBT7 754 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 KIAA1586Q9HCI6 787 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 PREBQ9HCU5 417 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 SDHAF3Q9NRP4 125 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 KLC4Q9NSK0 619 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 ECHDC1Q9NTX5 307 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 MCM9Q9NXL9 1143 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 ARPP21Q9UBL0 812 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 DDX20Q9UHI6 824 aaKnown RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 SAP30BPQ9UHR5 308 aaKnown RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 HOOK1Q9UJC3 728 aaKnown RBP8.02□□□□□ -1.13
HDAC3-216ENST00000523088 GGA2Q9UJY4 613 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 ZMIZ1Q9ULJ6 1067 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 HPCAL4Q9UM19 191 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 CLEC4AQ9UMR7 237 aa8.02□□□□□ -1.13
HDAC3-216ENST00000523088 ZNF236Q9UL36 1845 aa8.01□□□□□ -1.13
HDAC3-216ENST00000523088 TCRBV5S4A2TA0A5A2 114 aa8.01□□□□□ -1.13
HDAC3-216ENST00000523088 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms