RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.94□□□□□ -0.98
NUP54-215ENST00000514313 A0A1W2PPC4 97 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 ETV2O00321 342 aaPredicted RBP8.93□□□□□ -0.98
NUP54-215ENST00000514313 NPHP1O15259 732 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 RPS16P62249 146 aaKnown RBP8.93□□□□□ -0.98
NUP54-215ENST00000514313 HTRA4P83105 476 aaPredicted RBP8.93□□□□□ -0.98
NUP54-215ENST00000514313 APBA1Q02410 837 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 CREMQ03060 361 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 PABPC1LQ4VXU2 614 aaKnown RBP8.93□□□□□ -0.98
NUP54-215ENST00000514313 CCDC93Q567U6 631 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 DACT2Q5SW24 774 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 CPXCR1Q8N123 301 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 ATXN2LQ8WWM7 1075 aaKnown RBP8.93□□□□□ -0.98
NUP54-215ENST00000514313 NMD3Q96D46 503 aaKnown RBP8.93□□□□□ -0.98
NUP54-215ENST00000514313 SCLT1Q96NL6 688 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 GPHA2Q96T91 129 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 DPH1Q9BZG8 443 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 JADE2Q9NQC1 790 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 GNL3LQ9NVN8 582 aaKnown RBP8.93□□□□□ -0.98
NUP54-215ENST00000514313 SRRDQ9UH36 339 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 SLC23A1Q9UHI7 598 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 MED16Q9Y2X0 877 aa8.93□□□□□ -0.98
NUP54-215ENST00000514313 ARHGAP6O43182 974 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 SH3BP5O60239 455 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 SASH1O94885 1247 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 TECP42680 631 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 PHKA1P46020 1223 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 PPM1FP49593 454 aaPredicted RBP8.92□□□□□ -0.98
NUP54-215ENST00000514313 ATP2B3Q16720 1220 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 SLC35G1Q2M3R5 365 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 FAM47AQ5JRC9 791 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 OTUD7BQ6GQQ9 843 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 TMED8Q6PL24 325 aaPredicted RBP8.92□□□□□ -0.98
NUP54-215ENST00000514313 RALYLQ86SE5 291 aaKnown RBP8.92□□□□□ -0.98
NUP54-215ENST00000514313 ADGRG2Q8IZP9 1017 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 CMTM4Q8IZR5 234 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 TXNDC5Q8NBS9 432 aaKnown RBP8.92□□□□□ -0.98
NUP54-215ENST00000514313 GIMAP8Q8ND71 665 aaPredicted RBP8.92□□□□□ -0.98
NUP54-215ENST00000514313 OR6B3Q8NGW1 331 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 ARL8AQ96BM9 186 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 SMURF2Q9HAU4 748 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 ZDHHC8Q9ULC8 765 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 ZDHHC9Q9Y397 364 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 PCDHGB3Q9Y5G1 929 aa8.92□□□□□ -0.98
NUP54-215ENST00000514313 SH3D21A4FU49 640 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 PRSS29PA6NIE9 313 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 ADAMTS3O15072 1205 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 KCNJ5P48544 419 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 HSPA7P48741 367 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 SARSP49591 514 aaKnown RBP8.91□□□□□ -0.98
NUP54-215ENST00000514313 GZMKP49863 264 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 STARD3Q14849 445 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 PDCD2Q16342 344 aaPredicted RBP8.91□□□□□ -0.98
NUP54-215ENST00000514313 MPEG1Q2M385 716 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 ZNF783Q6ZMS7 281 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 SEM1Q6ZVN7 128 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 MBD6Q96DN6 1003 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 TMEM41AQ96HV5 264 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 TTLL2Q9BWV7 592 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 BRIP1Q9BX63 1249 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 GJB4Q9NTQ9 266 aa8.91□□□□□ -0.98
NUP54-215ENST00000514313 A0A1B0GTL3 188 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 TRIM43BA6NCK2 446 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 CXorf49A8MYA2 514 aaPredicted RBP8.9□□□□□ -0.98
NUP54-215ENST00000514313 BTN3A1O00481 513 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 KIAA0391O15091 583 aaKnown RBP8.9□□□□□ -0.98
NUP54-215ENST00000514313 ABHD16AO95870 558 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 GNAI3P08754 354 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 MTHFD1P11586 935 aaKnown RBP8.9□□□□□ -0.98
NUP54-215ENST00000514313 GLDCP23378 1020 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 GNAI1P63096 354 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 RNF151Q2KHN1 245 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 ADGRE4PQ86SQ3 457 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 SMAP1Q8IYB5 467 aaPredicted RBP8.9□□□□□ -0.98
NUP54-215ENST00000514313 SYTL1Q8IYJ3 562 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 PCSK9Q8NBP7 692 aaKnown RBP8.9□□□□□ -0.98
NUP54-215ENST00000514313 SLC35B2Q8TB61 432 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 CCT6BQ92526 530 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 TRIM43Q96BQ3 446 aaPredicted RBP8.9□□□□□ -0.98
NUP54-215ENST00000514313 MRI1Q9BV20 369 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 PACSIN1Q9BY11 444 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 UBA5Q9GZZ9 404 aa8.9□□□□□ -0.98
NUP54-215ENST00000514313 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.9□□□□□ -0.98
NUP54-215ENST00000514313 TCRBV7S2A1N4TA0A589 114 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 C9orf118A6NHY6 69 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 ATP5JP18859 108 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 FGFR2P21802 821 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 SLC6A4P31645 630 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 GRK6P43250 576 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 NOMO3P69849 1222 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 CAP1Q01518 475 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 PTH1RQ03431 593 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 ICA1Q05084 483 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 SLC13A2Q13183 592 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 NFYCQ13952 458 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 KIF22Q14807 665 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 ELF2Q15723 593 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 ARL13BQ3SXY8 428 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 LDHAL6AQ6ZMR3 332 aa8.89□□□□□ -0.99
NUP54-215ENST00000514313 MYCT1Q8N699 235 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms