RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 CXCL8P10145 99 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 MYBP10242 640 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 PDIA4P13667 645 aaKnown RBP21.15■□□□□ 0.98
USP40-207ENST00000450940 NMT1P30419 496 aaKnown RBP21.15■□□□□ 0.98
USP40-207ENST00000450940 HOXA9P31269 272 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 OR1D2P34982 312 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 TXLNAP40222 546 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 MTMR3Q13615 1198 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 SLC39A4Q6P5W5 647 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 RSPO2Q6UXX9 243 aaPredicted RBP21.15■□□□□ 0.98
USP40-207ENST00000450940 RTL10Q7L3V2 364 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 LINC00301Q8NCQ3 95 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 STAMQ92783 540 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 PBXIP1Q96AQ6 731 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 DNAJC19Q96DA6 116 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 TSPAN18Q96SJ8 248 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 MUC6Q6W4X9 2439 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 MYMKA6NI61 221 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 I3L4J1 428 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 SYN3O14994 580 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 TBC1D4O60343 1298 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 ASGR2P07307 311 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 POU2F2P09086 479 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 KCNA4P22459 653 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 LRPAP1P30533 357 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 TNFSF9P41273 254 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 MATR3P43243 847 aaKnown RBP eCLIP21.14■□□□□ 0.972e-6■■■□□ 18.6
USP40-207ENST00000450940 MRPL58Q14197 206 aaKnown RBP21.14■□□□□ 0.97
USP40-207ENST00000450940 UVSSAQ2YD98 709 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 CCDC73Q6ZRK6 1079 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 SV2BQ7L1I2 683 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 ZNF720Q7Z2F6 126 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 DDX12PQ92771 950 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 SUSD3Q96L08 255 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 STRA6Q9BX79 667 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 ZHX3Q9H4I2 956 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 EPS15L1Q9UBC2 864 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 SEL1LQ9UBV2 794 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 STYXL1Q9Y6J8 313 aa21.14■□□□□ 0.97
USP40-207ENST00000450940 ANK1P16157 1881 aa21.13■□□□□ 0.97
USP40-207ENST00000450940 ZDBF2Q9HCK1 2354 aa21.13■□□□□ 0.97
USP40-207ENST00000450940 A0A087X0B3 334 aa21.13■□□□□ 0.97
USP40-207ENST00000450940 PPP1R37O75864 691 aa21.13■□□□□ 0.97
USP40-207ENST00000450940 CYP3A5P20815 502 aa21.13■□□□□ 0.97
USP40-207ENST00000450940 ENOX2Q16206 610 aaKnown RBP21.13■□□□□ 0.97
USP40-207ENST00000450940 ZC2HC1CQ53FD0 456 aaPredicted RBP21.13■□□□□ 0.97
USP40-207ENST00000450940 SLC8B1Q6J4K2 584 aa21.13■□□□□ 0.97
USP40-207ENST00000450940 FBXL6Q8N531 539 aa21.13■□□□□ 0.97
USP40-207ENST00000450940 HVCN1Q96D96 273 aa21.13■□□□□ 0.97
USP40-207ENST00000450940 PIDD1Q9HB75 910 aa21.13■□□□□ 0.97
USP40-207ENST00000450940 CPSF3Q9UKF6 684 aaKnown RBP21.13■□□□□ 0.97
USP40-207ENST00000450940 CDY1Q9Y6F8 540 aa21.13■□□□□ 0.97
USP40-207ENST00000450940 KMT2EQ8IZD2 1858 aa21.13■□□□□ 0.97
USP40-207ENST00000450940 LACTBL1A8MY62 500 aa21.12■□□□□ 0.97
USP40-207ENST00000450940 PPP6R2O75170 966 aa21.12■□□□□ 0.97
USP40-207ENST00000450940 VARS2Q5ST30 1063 aaKnown RBP21.12■□□□□ 0.97
USP40-207ENST00000450940 ZBTB41Q5SVQ8 909 aa21.12■□□□□ 0.97
USP40-207ENST00000450940 LIN9Q5TKA1 542 aa21.12■□□□□ 0.97
USP40-207ENST00000450940 DYMQ7RTS9 669 aa21.12■□□□□ 0.97
USP40-207ENST00000450940 CD302Q8IX05 232 aa21.12■□□□□ 0.97
USP40-207ENST00000450940 FAM122AQ96E09 287 aa21.12■□□□□ 0.97
USP40-207ENST00000450940 ZNF396Q96N95 335 aaPredicted RBP21.12■□□□□ 0.97
USP40-207ENST00000450940 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.12■□□□□ 0.97
USP40-207ENST00000450940 IGSF9Q9P2J2 1179 aa21.12■□□□□ 0.97
USP40-207ENST00000450940 TUBGCP4Q9UGJ1 667 aa21.12■□□□□ 0.97
USP40-207ENST00000450940 UBQLN1Q9UMX0 589 aaKnown RBP21.12■□□□□ 0.97
USP40-207ENST00000450940 NUB1Q9Y5A7 615 aa21.12■□□□□ 0.97
USP40-207ENST00000450940 NOTCH4Q99466 2003 aa21.12■□□□□ 0.97
USP40-207ENST00000450940 ANKRD63C9JTQ0 380 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 ABLIM3O94929 683 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 C8AP07357 584 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 GAP43P17677 238 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 POU5F1Q01860 360 aaKnown RBP21.11■□□□□ 0.97
USP40-207ENST00000450940 PPP2R3AQ06190 1150 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 STK38Q15208 465 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 PPM1LQ5SGD2 360 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 AXDND1Q5T1B0 1012 aaPredicted RBP21.11■□□□□ 0.97
USP40-207ENST00000450940 SLFN12LQ6IEE8 588 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 SFR1Q86XK3 245 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 HSCBQ8IWL3 235 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 ZNF461Q8TAF7 563 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 MYADMQ96S97 322 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 MSTO1Q9BUK6 570 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 RPF1Q9H9Y2 349 aaKnown RBP21.11■□□□□ 0.97
USP40-207ENST00000450940 KCNK12Q9HB15 430 aa21.11■□□□□ 0.97
USP40-207ENST00000450940 FRMD3A2A2Y4 597 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 H7C4K7 107 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 M0QZQ0 153 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 SPTLC2O15270 562 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 YEATS4O95619 227 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 AARSP49588 968 aaKnown RBP eCLIP21.1■□□□□ 0.97
USP40-207ENST00000450940 TDGQ13569 410 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 NXPE3Q969Y0 559 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 KIF12Q96FN5 646 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 PANK2Q9BZ23 570 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 SMOC2Q9H3U7 446 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 OLFML3Q9NRN5 406 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 TFIP11Q9UBB9 837 aaKnown RBP21.1■□□□□ 0.97
USP40-207ENST00000450940 WDFY4Q6ZS81 3184 aa21.1■□□□□ 0.97
USP40-207ENST00000450940 XPOTO43592 962 aaKnown RBP21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms