RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PCDHGA12O60330 932 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 TRIM27P14373 513 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 ZNF37AP17032 561 aaPredicted RBP5.19□□□□□ -1.58
VPS29-202ENST00000447578 LPOP22079 712 aaPredicted RBP5.19□□□□□ -1.58
VPS29-202ENST00000447578 XPAP23025 273 aaPredicted RBP5.19□□□□□ -1.58
VPS29-202ENST00000447578 PLA2G5P39877 138 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 GPR3P46089 330 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 PTH2RP49190 550 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 KRTAP10-7P60409 375 aaPredicted RBP5.19□□□□□ -1.58
VPS29-202ENST00000447578 PHC1P78364 1004 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 KRT85P78386 507 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 APBA1Q02410 837 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 TAP1Q03518 808 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 PPARAQ07869 468 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 BEAN1Q3B7T3 259 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 PDCD4Q53EL6 469 aaKnown RBP5.19□□□□□ -1.58
VPS29-202ENST00000447578 LMBR1LQ6UX01 489 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 FRMD7Q6ZUT3 714 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 EPM2AIP1Q7L775 607 aaPredicted RBP5.19□□□□□ -1.58
VPS29-202ENST00000447578 LYSMD2Q8IV50 215 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 ZNF610Q8N9Z0 462 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 CPEB3Q8NE35 698 aaKnown RBP5.19□□□□□ -1.58
VPS29-202ENST00000447578 LMBR1Q8WVP7 490 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 R3HDMLQ9H3Y0 253 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 PRDM12Q9H4Q4 367 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 SYBUQ9NX95 663 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 USP25Q9UHP3 1055 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 EVLQ9UI08 416 aaPredicted RBP5.19□□□□□ -1.58
VPS29-202ENST00000447578 MAP3K2Q9Y2U5 619 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 PCDHGA9Q9Y5G4 932 aaKnown RBP5.19□□□□□ -1.58
VPS29-202ENST00000447578 PCDHGA8Q9Y5G5 932 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 PCDHGA7Q9Y5G6 932 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 PCDHGA6Q9Y5G7 932 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 PCDHGA3Q9Y5H0 932 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 PCDHGA2Q9Y5H1 932 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 PPP2R3BQ9Y5P8 575 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 ARAP1Q96P48 1450 aa5.19□□□□□ -1.58
VPS29-202ENST00000447578 TRIM75PA6NK02 468 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 ERC2O15083 957 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 CREB3O43889 395 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 IFIT2P09913 472 aaKnown RBP5.18□□□□□ -1.58
VPS29-202ENST00000447578 CLEC2LP0C7M8 214 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 FOXI1Q12951 378 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 PICALMQ13492 652 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 LONRF3Q496Y0 759 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 COBLL1Q53SF7 1204 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 GPR158Q5T848 1215 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 ABHD15Q6UXT9 468 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 RNF169Q8NCN4 708 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 PJA1Q8NG27 643 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 OR10H5Q8NGA6 315 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 FBXO41Q8TF61 875 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 AIFM3Q96NN9 605 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 NUP88Q99567 741 aaPredicted RBP5.18□□□□□ -1.58
VPS29-202ENST00000447578 SARGQ9BW04 601 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 ANLNQ9NQW6 1124 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 MAN1C1Q9NR34 630 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 ADARB2Q9NS39 739 aaKnown RBP5.18□□□□□ -1.58
VPS29-202ENST00000447578 USP36Q9P275 1121 aaKnown RBP5.18□□□□□ -1.58
VPS29-202ENST00000447578 SAP30BPQ9UHR5 308 aaKnown RBP5.18□□□□□ -1.58
VPS29-202ENST00000447578 KCNG1Q9UIX4 513 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 CC2D2AQ9P2K1 1620 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 CUX2O14529 1486 aa5.18□□□□□ -1.58
VPS29-202ENST00000447578 FRMPD2Q68DX3 1309 aaPredicted RBP5.18□□□□□ -1.58
VPS29-202ENST00000447578 GAGE12BA1L429 117 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 GAGE12HA6NDE8 117 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 NRP2O60462 931 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 PRAMEF4O60810 478 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 HSPA6P17066 643 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 GPR15P49685 360 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 TP53BP2Q13625 1128 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 TRIM25Q14258 630 aaKnown RBP5.17□□□□□ -1.58
VPS29-202ENST00000447578 GBX1Q14549 363 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 COLEC12Q5KU26 742 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 IL31Q6EBC2 164 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 RD3Q7Z3Z2 195 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 MDM1Q8TC05 714 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 TGFBRAP1Q8WUH2 860 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 CAVIN3Q969G5 261 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 ADAM2Q99965 735 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 ARPC5LQ9BPX5 153 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 POGKQ9P215 609 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 PRSS50Q9UI38 385 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 NUMBLQ9Y6R0 609 aa5.17□□□□□ -1.58
VPS29-202ENST00000447578 FGD5Q6ZNL6 1462 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 TBKBP1A7MCY6 615 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 AP1G1O43747 822 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 TYRP1P17643 537 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 BMPR1AP36894 532 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 NEK3P51956 506 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 SEC24CP53992 1094 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 NRG3P56975 720 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 GUCY1B3Q02153 619 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 GRM3Q14832 879 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 PDCD1Q15116 288 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 IFIT1BQ5T764 474 aaKnown RBP5.16□□□□□ -1.58
VPS29-202ENST00000447578 ZKSCAN2Q63HK3 967 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 EFCAB12Q6NXP0 572 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 SYCE2Q6PIF2 218 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 PLXDC1Q8IUK5 500 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms