RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 UBXN8O00124 270 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 PPP1R12AO14974 1030 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 ZBED1O96006 694 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 RPN1P04843 607 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 KPNA2P52292 529 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 RBM10P98175 930 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 MAP3K10Q02779 954 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 ZNF557Q8N988 423 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 GPR63Q9BZJ6 419 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 NSRP1Q9H0G5 558 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 PCMTD2Q9NV79 361 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 PIK3C2BO00750 1634 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 A0A087WZ62 844 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 SLC12A8A0AV02 714 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 HIP1RO75146 1068 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 CPP00450 1065 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 SLC2A3P11169 496 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 PHBP35232 272 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 BROXQ5VW32 411 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 PLA2G4FQ68DD2 849 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 CAMKK1Q8N5S9 505 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 CASP10Q92851 521 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 VPS39Q96JC1 886 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 ZNF512BQ96KM6 892 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 APPL1Q9UKG1 709 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 SUPT3HB4E1H0 165 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 CLTAP09496 248 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 HIST1H2AGP0C0S8 130 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 HIST1H2ADP20671 130 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 KLRK1P26718 216 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 HALP42357 657 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 USP11P51784 963 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 OXCT1P55809 520 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 EFEMP1Q12805 493 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 RIOX2Q8IUF8 465 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 HIST1H2AHQ96KK5 128 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 RPRD1AQ96P16 312 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 HIST1H2AJQ99878 128 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 H2AFJQ9BTM1 129 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 TRIM31Q9BZY9 425 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 SLC30A1Q9Y6M5 507 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 CEP104O60308 925 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 PLCG1P19174 1290 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 PBLDP30039 288 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 MYL5Q02045 173 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 FKBP1CQ5VVH2 108 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 RASAL3Q86YV0 1011 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 PDCL2Q8N4E4 241 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 INTS2Q9H0H0 1204 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 NEUROD4Q9HD90 331 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 PCDHB15Q9Y5E8 787 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 C1QTNF3-AMACRE9PGA6 284 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 KPNA3O00505 521 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 SH2B2O14492 632 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 TEX33O43247 280 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 ERN1O75460 977 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 TNNI3P19429 210 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 KRT20P35900 424 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 PRAMEP78395 509 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 LBRQ14739 615 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 CEP152O94986 1710 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 DDTLA6NHG4 134 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 PIK3R2O00459 728 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 HTR1BP28222 390 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 YWHAGP61981 247 aaKnown RBP eCLIP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 AMHR2Q16671 573 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 SBK1Q52WX2 424 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 PPP1R13LQ8WUF5 828 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 OSCP1Q8WVF1 389 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 TIPINQ9BVW5 301 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 POLD4Q9HCU8 107 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 UTP6Q9NYH9 597 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 I3L4J1 428 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 ENDOD1O94919 500 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 ETFBP38117 255 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 ADCY8P40145 1251 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 MAGEA1P43355 309 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 GLUD2P49448 558 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 OAZ1P54368 228 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 SEC13P55735 322 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 FKBP1AP62942 108 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 TPGS1Q6ZTW0 290 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 TMTC3Q6ZXV5 915 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 C16orf59Q7L2K0 433 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 TRMT11Q7Z4G4 463 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 C11orf96Q7Z7L8 435 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 CDR2LQ86X02 465 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 PASD1Q8IV76 773 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 SYTL1Q8IYJ3 562 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 ASAP3Q8TDY4 903 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 BADQ92934 168 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 ARL8AQ96BM9 186 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 RBSNQ9H1K0 784 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 DNAJC25Q9H1X3 360 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 DNAJC12Q9UKB3 198 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 TMX2Q9Y320 296 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 ABCC12Q96J65 1359 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 IQGAP1P46940 1657 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 A0A087WWV3 80 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 LRRD1A4D1F6 860 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms