RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 DSG1Q02413 1049 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 ARHGEF7Q14155 803 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 ZNF618Q5T7W0 954 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 CYP4A22Q5TCH4 519 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 TMCC3Q9ULS5 477 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 DYNC1LI2O43237 492 aaPredicted RBP14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 PRIM2P49643 509 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 MCPH1Q8NEM0 835 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 SEPT1Q8WYJ6 367 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 RANBP17Q9H2T7 1088 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 RGS12O14924 1447 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 ACTN3Q08043 901 aaPredicted RBP14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 LRRC59Q96AG4 307 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 VMP1Q96GC9 406 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 PPP1R36Q96LQ0 422 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 VAV3Q9UKW4 847 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 F8W810 466 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 ARHGDIBP52566 201 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 EDRF1Q3B7T1 1238 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 REXO4Q9GZR2 422 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 RGS18Q9NS28 235 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 GMEB1Q9Y692 573 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 PARD3Q8TEW0 1356 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 BTBD18B2RXH4 712 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 TCP11X1B4DZS4 312 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 TAF4O00268 1085 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 COPB2P35606 906 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 GPC3P51654 580 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 KRT35Q92764 455 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 EEF2KMTQ96G04 330 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 STN1Q9H668 368 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 RPS6KB2Q9UBS0 482 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 POLR3AO14802 1390 aaPredicted RBP14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 SERPINB9P50453 376 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 BCAP31P51572 246 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 RHOT1Q8IXI2 618 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 HMG20AQ9NP66 347 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 VPS9D1Q9Y2B5 631 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 MTO1Q9Y2Z2 717 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 KANSL1LA0AUZ9 987 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 FNTAP49354 379 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 NME3Q13232 169 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 MAPK6Q16659 721 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 NFRKBQ6P4R8 1299 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 CATSPER4Q7RTX7 472 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 SPATA21Q7Z572 469 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 TRPC7Q9HCX4 862 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 FKBP14Q9NWM8 211 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 TBKBP1A7MCY6 615 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 AGR3Q8TD06 166 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 MCRS1Q96EZ8 462 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 PNMA8CA0A1B0GUJ8 204 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 H3BMM5 538 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 NDUFB5O43674 189 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 UNC45BQ8IWX7 931 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 VPS33AQ96AX1 596 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 MAML3Q96JK9 1138 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 S100GP29377 79 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 VSTM4Q8IW00 320 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 LATS2Q9NRM7 1088 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 TTC7AQ9ULT0 858 aaPredicted RBP14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 RPS7P62081 194 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 KIZQ2M2Z5 673 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 TCEAL5Q5H9L2 206 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 TAF8Q7Z7C8 310 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 CYP39A1Q9NYL5 469 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 NT5C2P49902 561 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 NFIL3Q16649 462 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 C2CD6Q53TS8 623 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 TWF2Q6IBS0 349 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 CD274Q9NZQ7 290 aa14.61□□□□□ -0.07
CCDC88A-201ENST00000263630 ERN1O75460 977 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 ACTR2P61160 394 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 ARMC4Q5T2S8 1044 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 GALNT4Q8N4A0 578 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 ABCB1P08183 1280 aaPredicted RBP14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 ZNF564Q8TBZ8 553 aaPredicted RBP14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 C14orf93Q9H972 538 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 KLHL3Q9UH77 587 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 FHOD1Q9Y613 1164 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 E9PBE3 544 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 PGK2P07205 417 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 SESN2P58004 480 aaPredicted RBP14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 RPS8P62241 208 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 DPYDQ12882 1025 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 PTPRN2Q92932 1015 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 HIC2Q96JB3 615 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 PRMT1Q99873 361 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 ZSWIM6Q9HCJ5 1215 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 C3orf70A6NLC5 250 aaPredicted RBP14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 CNOT3O75175 753 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 TERF2Q15554 542 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 COBLL1Q53SF7 1204 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 CCDC137Q6PK04 289 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 SLITRK2Q9H156 845 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 C2orf40Q9H1Z8 148 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 ARHGEF38Q9NXL2 777 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 ZBTB1Q9Y2K1 713 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 SNX24Q9Y343 169 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 NPATQ14207 1427 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms