RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 HFE2Q6ZVN8 426 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 TXNRD3Q86VQ6 643 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 DNAAF5Q86Y56 855 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 MAPKAPK5Q8IW41 473 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 ASAP3Q8TDY4 903 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 IGDCC4Q8TDY8 1250 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 ZNF622Q969S3 477 aaKnown RBP eCLIP5.89□□□□□ -1.476e-8■□□□□ 9.1
LIMA1-203ENST00000547825 IRAK4Q9NWZ3 460 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 DAAM1Q9Y4D1 1078 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 LCTP09848 1927 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 LGALS16A8MUM7 142 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 CLIC2O15247 247 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 OPHN1O60890 802 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 SUN1O94901 812 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 FGGP02679 453 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 MYBL2P10244 700 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 FCER1AP12319 257 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 KRT5P13647 590 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 PAX7P23759 505 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 STAT1P42224 750 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 SLC1A4P43007 532 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 C1QTNF8P60827 252 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 MLLT1Q03111 559 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-203ENST00000547825 TKFCQ3LXA3 575 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 HP1BP3Q5SSJ5 553 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-203ENST00000547825 ANKRD20A3Q5VUR7 823 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 TRIM4Q9C037 500 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 RAB17Q9H0T7 212 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 VPS37BQ9H9H4 285 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 DZANK1Q9NVP4 752 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 GEMIN8Q9NWZ8 242 aaKnown RBP5.89□□□□□ -1.47
LIMA1-203ENST00000547825 ARMCX3Q9UH62 379 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-203ENST00000547825 J3QW42 95 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 EPB41P11171 864 aaKnown RBP5.89□□□□□ -1.47
LIMA1-203ENST00000547825 KLRK1P26718 216 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 ADCY8P40145 1251 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 NPY5RQ15761 445 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 GPR162Q16538 588 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 IL17AQ16552 155 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 CAPRIN2Q6IMN6 1127 aaKnown RBP5.89□□□□□ -1.47
LIMA1-203ENST00000547825 CCDC174Q6PII3 467 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 LONP2Q86WA8 852 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 CCDC13Q8IYE1 715 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 ATP6V1G3Q96LB4 118 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 FMO2Q99518 471 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 VCXQ9H320 206 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 LY9Q9HBG7 655 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 SLC40A1Q9NP59 571 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 PRKAG3Q9UGI9 489 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 LIMA1Q9UHB6 759 aaKnown RBP5.89□□□□□ -1.47
LIMA1-203ENST00000547825 FBXO2Q9UK22 296 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-203ENST00000547825 FBXL5Q9UKA1 691 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 HMGB1P1B2RPK0 211 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 KLRF2D3W0D1 207 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 PGRMC1O00264 195 aaKnown RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 THAP12O43422 761 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 PDE8BO95263 885 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 CCNE1P24864 410 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 MDH1P40925 334 aaKnown RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 PRPHP41219 470 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 RPS8P62241 208 aaKnown RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 IGBP1P78318 339 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 FAM26FQ5R3K3 315 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 DACT2Q5SW24 774 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 ADGRA1Q86SQ6 560 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 GPBP1Q86WP2 473 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 TEX2Q8IWB9 1127 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 CNPY4Q8N129 248 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 REXO1Q8N1G1 1221 aaKnown RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 CFAP61Q8NHU2 1237 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 ZBTB10Q96DT7 871 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 NECAB3Q96P71 396 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 NAP1L3Q99457 506 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 PCDH12Q9NPG4 1184 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 SNX12Q9UMY4 172 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 LEMD3Q9Y2U8 911 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 GPC6Q9Y625 555 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 XDHP47989 1333 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 FRMPD2Q68DX3 1309 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 BRCA2P51587 3418 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 SOBPA7XYQ1 873 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 GFPT2O94808 682 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 OR52Z1P0C646 297 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 MSH2P43246 934 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 VWA3BQ502W6 1294 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 RAB3IL1Q8TBN0 382 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 MIPOL1Q8TD10 442 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 STK35Q8TDR2 534 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 TGFBRAP1Q8WUH2 860 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 BICD1Q96G01 975 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 STRBPQ96SI9 672 aaKnown RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 CYTH2Q99418 400 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 TSC22D3Q99576 134 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 SLC30A3Q99726 388 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 RNF26Q9BY78 433 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 ACTR5Q9H9F9 607 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 NOP53Q9NZM5 478 aaKnown RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 DNMT3LQ9UJW3 386 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 MYH4Q9Y623 1939 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 RASSF10A6NK89 507 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms