RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PIK3R1P27986 724 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 STAT4Q14765 748 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 PDZK1Q5T2W1 519 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 CYP4Z1Q86W10 505 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 PPP2R3CQ969Q6 453 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 CNDP1Q96KN2 507 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 SLC9A2Q9UBY0 812 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 DFFAO00273 331 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 NPEPPSP55786 919 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 C20orf96Q9NUD7 363 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 ARHGEF11O15085 1522 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 GGCXP38435 758 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 PHKA2P46019 1235 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 BCL2L14Q9BZR8 327 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 CNOT8Q9UFF9 292 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 FAM187AA6NFU0 413 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 ENO3P13929 434 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 CCND1P24385 295 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 PDIA2Q13087 525 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 SNX31Q8N9S9 440 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 PHACTR1Q9C0D0 580 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 HNRNPH2P55795 449 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 CC2D1AQ6P1N0 951 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 RFX8Q6ZV50 586 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 ITGB1BP2Q9UKP3 347 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 AQRO60306 1485 aaKnown RBP eCLIP14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 NDUFS3O75489 264 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 MYL2P10916 166 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 YWHAZP63104 245 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 MTERF2Q49AM1 385 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 FBXO42Q6P3S6 717 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 TCP10L2B9ZVM9 353 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 ANKRD40Q6AI12 368 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 DGKHQ86XP1 1220 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 WDR36Q8NI36 951 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 NDST4Q9H3R1 872 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 ADAM21Q9UKJ8 722 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 CDY2AQ9Y6F7 541 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 CDY1Q9Y6F8 540 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 CD109Q6YHK3 1445 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 ADGRA3Q8IWK6 1321 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 MAGI1Q96QZ7 1491 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 KCNK10P57789 538 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 P3H1Q32P28 736 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 CMTR1Q8N1G2 835 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 CYP4Z2PQ8N1L4 340 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 ZNF594Q96JF6 807 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 ADI1Q9BV57 179 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 HSPBP1Q9NZL4 362 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 STX4Q12846 297 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 MTHFSDQ2M296 383 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 CEP72Q9P209 647 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 TSR3Q9UJK0 312 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 PFASO15067 1338 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 PDE5AO76074 875 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 WARSP23381 471 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 HIST2H2ACQ16777 129 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 NDUFAF6Q330K2 333 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 HIST2H2AA3Q6FI13 130 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 RNFT2Q96EX2 444 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 MLPHQ9BV36 600 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 ASMTLO95671 621 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 PLA2G4BP0C869 781 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 AKT1P31749 480 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 SDE2Q6IQ49 451 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 FAM9CQ8IZT9 166 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 PGBD4Q96DM1 585 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 ECSITQ9BQ95 431 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 NUP85Q9BW27 656 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 GPR162Q16538 588 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 UGT3A1Q6NUS8 523 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 NT5DC4Q86YG4 428 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 CLIC6Q96NY7 704 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 CLIC4Q9Y696 253 aa14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 ZC3H4Q9UPT8 1303 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-201ENST00000263630 FAM135BQ49AJ0 1406 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 ASNA1O43681 348 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 CDC40O60508 579 aaKnown RBP eCLIP14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 SLC39A14Q15043 492 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 ALFQ53S48 1182 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 SHCBP1Q8NEM2 672 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 UBXN6Q9BZV1 441 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 ARMC7Q9H6L4 198 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 SPTLC3Q9NUV7 552 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 PDP2Q9P2J9 529 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 GTF2A1LQ9UNN4 478 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 LRRC24Q50LG9 513 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 KLHL17Q6TDP4 642 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 ENOSF1Q7L5Y1 443 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 ATP6V1G3Q96LB4 118 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 PARVAQ9NVD7 372 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 H2AFYO75367 372 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 RGS20O76081 388 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 DDX53Q86TM3 631 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 SFR1Q86XK3 245 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 MAN1B1Q9UKM7 699 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 SH3GLB1Q9Y371 365 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 PSMD14O00487 310 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 ZNF24P17028 368 aa14.62□□□□□ -0.07
CCDC88A-201ENST00000263630 BCAR1P56945 870 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms