RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 COL4A4P53420 1690 aaPredicted RBP28.17■■■□□ 2.1
TRIM28-204ENST00000594806 EIF3DO15371 548 aaKnown RBP eCLIP28.17■■■□□ 2.1
TRIM28-204ENST00000594806 MATR3P43243 847 aaKnown RBP eCLIP28.17■■■□□ 2.1
TRIM28-204ENST00000594806 GRIK3Q13003 919 aa28.17■■■□□ 2.1
TRIM28-204ENST00000594806 PSMD2Q13200 908 aa28.17■■■□□ 2.1
TRIM28-204ENST00000594806 ENGASEQ8NFI3 743 aa28.17■■■□□ 2.1
TRIM28-204ENST00000594806 CCDC47Q96A33 483 aaKnown RBP28.17■■■□□ 2.1
TRIM28-204ENST00000594806 ZFP42Q96MM3 310 aa28.17■■■□□ 2.1
TRIM28-204ENST00000594806 TIGD1Q96MW7 591 aa28.17■■■□□ 2.1
TRIM28-204ENST00000594806 ACAP3Q96P50 834 aa28.17■■■□□ 2.1
TRIM28-204ENST00000594806 GDAQ9Y2T3 454 aa28.17■■■□□ 2.1
TRIM28-204ENST00000594806 STYXL1Q9Y6J8 313 aa28.17■■■□□ 2.1
TRIM28-204ENST00000594806 POMCP01189 267 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 IGFBP4P22692 258 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 BCAR1P56945 870 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 PLCB3Q01970 1234 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 CLEC17AQ6ZS10 378 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 THNSL1Q8IYQ7 743 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 GRAMD1CQ8IYS0 662 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 GSTCDQ8NEC7 633 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 SPG21Q9NZD8 308 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 HCSTQ9UBK5 93 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 LZTS1Q9Y250 596 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 UBE4BO95155 1302 aa28.16■■■□□ 2.1
TRIM28-204ENST00000594806 TRIP11Q15643 1979 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 CHD7Q9P2D1 2997 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP28.15■■■□□ 2.1
TRIM28-204ENST00000594806 A0A0B4J269 797 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 ZC3H11AO75152 810 aaKnown RBP eCLIP28.15■■■□□ 2.1
TRIM28-204ENST00000594806 NR1I2O75469 434 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 ALDH2P05091 517 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 ITGB1P05556 798 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 MYBP10242 640 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 CASP1P29466 404 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 SCNN1GP51170 649 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 AFF1P51825 1210 aaKnown RBP28.15■■■□□ 2.1
TRIM28-204ENST00000594806 KRT17Q04695 432 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 SNW1Q13573 536 aaKnown RBP28.15■■■□□ 2.1
TRIM28-204ENST00000594806 SYCP3Q8IZU3 236 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 MRPL38Q96DV4 380 aaKnown RBP28.15■■■□□ 2.1
TRIM28-204ENST00000594806 MIOSQ9NXC5 875 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 KLK14Q9P0G3 267 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 STK39Q9UEW8 545 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 MTCH2Q9Y6C9 303 aa28.15■■■□□ 2.1
TRIM28-204ENST00000594806 OGTO15294 1046 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 KLRC4O43908 158 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 FGF18O76093 207 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 GALTP07902 379 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 CLTAP09496 248 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 CASP5P51878 434 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 POU5F1Q01860 360 aaKnown RBP28.14■■■□□ 2.1
TRIM28-204ENST00000594806 DSC1Q08554 894 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 XKR4Q5GH76 650 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 ZNF280BQ86YH2 543 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 SLC39A11Q8N1S5 342 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 ZNF507Q8TCN5 953 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 SPPL3Q8TCT6 385 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 EXOC1Q9NV70 894 aa28.14■■■□□ 2.1
TRIM28-204ENST00000594806 PUF60Q9UHX1 559 aaKnown RBP28.14■■■□□ 2.1
TRIM28-204ENST00000594806 HOOK1Q9UJC3 728 aaKnown RBP28.14■■■□□ 2.1
TRIM28-204ENST00000594806 PRRC2BQ5JSZ5 2229 aaKnown RBP28.13■■■□□ 2.09
TRIM28-204ENST00000594806 DDHD2O94830 711 aa28.13■■■□□ 2.09
TRIM28-204ENST00000594806 THP07101 528 aa28.13■■■□□ 2.09
TRIM28-204ENST00000594806 SLC39A4Q6P5W5 647 aa28.13■■■□□ 2.09
TRIM28-204ENST00000594806 ALKAL1Q6UXT8 129 aa28.13■■■□□ 2.09
TRIM28-204ENST00000594806 EPM2AIP1Q7L775 607 aaPredicted RBP28.13■■■□□ 2.09
TRIM28-204ENST00000594806 ELOA2Q8IYF1 753 aaPredicted RBP28.13■■■□□ 2.09
TRIM28-204ENST00000594806 COLGALT2Q8IYK4 626 aa28.13■■■□□ 2.09
TRIM28-204ENST00000594806 CEP120Q8N960 986 aa28.13■■■□□ 2.09
TRIM28-204ENST00000594806 MSTO1Q9BUK6 570 aa28.13■■■□□ 2.09
TRIM28-204ENST00000594806 GBP3Q9H0R5 595 aa28.13■■■□□ 2.09
TRIM28-204ENST00000594806 PLEKHA5Q9HAU0 1116 aa28.13■■■□□ 2.09
TRIM28-204ENST00000594806 GTF3C5Q9Y5Q8 519 aaPredicted RBP28.13■■■□□ 2.09
TRIM28-204ENST00000594806 GRM6O15303 877 aa28.12■■■□□ 2.09
TRIM28-204ENST00000594806 PRPF6O94906 941 aaKnown RBP28.12■■■□□ 2.09
TRIM28-204ENST00000594806 HARSP12081 509 aaKnown RBP28.12■■■□□ 2.09
TRIM28-204ENST00000594806 UBE2HP62256 183 aa28.12■■■□□ 2.09
TRIM28-204ENST00000594806 KCNA1Q09470 495 aa28.12■■■□□ 2.09
TRIM28-204ENST00000594806 DPYDQ12882 1025 aa28.12■■■□□ 2.09
TRIM28-204ENST00000594806 TMEM169Q96HH4 297 aa28.12■■■□□ 2.09
TRIM28-204ENST00000594806 TSPAN18Q96SJ8 248 aa28.12■■■□□ 2.09
TRIM28-204ENST00000594806 FGFBP2Q9BYJ0 223 aa28.12■■■□□ 2.09
TRIM28-204ENST00000594806 HAPLN2Q9GZV7 340 aa28.12■■■□□ 2.09
TRIM28-204ENST00000594806 ALG13Q9NP73 1137 aaKnown RBP28.12■■■□□ 2.09
TRIM28-204ENST00000594806 FAN1Q9Y2M0 1017 aa28.12■■■□□ 2.09
TRIM28-204ENST00000594806 ANKRD63C9JTQ0 380 aa28.11■■■□□ 2.09
TRIM28-204ENST00000594806 PTGESO14684 152 aa28.11■■■□□ 2.09
TRIM28-204ENST00000594806 RPN1P04843 607 aaKnown RBP28.11■■■□□ 2.09
TRIM28-204ENST00000594806 GARTP22102 1010 aa28.11■■■□□ 2.09
TRIM28-204ENST00000594806 OSTNP61366 133 aa28.11■■■□□ 2.09
TRIM28-204ENST00000594806 SNRPFP62306 86 aaKnown RBP28.11■■■□□ 2.09
TRIM28-204ENST00000594806 TUSC3Q13454 348 aa28.11■■■□□ 2.09
TRIM28-204ENST00000594806 KMT5BQ4FZB7 885 aa28.11■■■□□ 2.09
TRIM28-204ENST00000594806 PDE12Q6L8Q7 609 aaKnown RBP28.11■■■□□ 2.09
TRIM28-204ENST00000594806 HPS3Q969F9 1004 aa28.11■■■□□ 2.09
TRIM28-204ENST00000594806 SLC38A7Q9NVC3 462 aa28.11■■■□□ 2.09
TRIM28-204ENST00000594806 DNAJB4Q9UDY4 337 aa28.11■■■□□ 2.09
TRIM28-204ENST00000594806 PLXNA4Q9HCM2 1894 aa28.1■■■□□ 2.09
TRIM28-204ENST00000594806 KIAA0391O15091 583 aaKnown RBP28.1■■■□□ 2.09
TRIM28-204ENST00000594806 KCNE1P15382 129 aa28.1■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms