RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 DLATP10515 647 aaKnown RBP33.2■■■□□ 2.9
CTCF-203ENST00000566078 TRIM21P19474 475 aaKnown RBP33.2■■■□□ 2.9
CTCF-203ENST00000566078 HOXA11P31270 313 aaPredicted RBP33.2■■■□□ 2.9
CTCF-203ENST00000566078 BRSK2Q8IWQ3 736 aa33.2■■■□□ 2.9
CTCF-203ENST00000566078 CEP120Q8N960 986 aa33.2■■■□□ 2.9
CTCF-203ENST00000566078 LSM14BQ9BX40 385 aaKnown RBP33.2■■■□□ 2.9
CTCF-203ENST00000566078 CPSF3Q9UKF6 684 aaKnown RBP33.2■■■□□ 2.9
CTCF-203ENST00000566078 PDCD11Q14690 1871 aaKnown RBP33.19■■■□□ 2.9
CTCF-203ENST00000566078 N4BP1O75113 896 aaKnown RBP33.19■■■□□ 2.9
CTCF-203ENST00000566078 AXLP30530 894 aa33.19■■■□□ 2.9
CTCF-203ENST00000566078 GCLMP48507 274 aa33.19■■■□□ 2.9
CTCF-203ENST00000566078 OSTNP61366 133 aa33.19■■■□□ 2.9
CTCF-203ENST00000566078 NOTUMQ6P988 496 aa33.19■■■□□ 2.9
CTCF-203ENST00000566078 GBP6Q6ZN66 633 aa33.19■■■□□ 2.9
CTCF-203ENST00000566078 FAM228AQ86W67 206 aa33.19■■■□□ 2.9
CTCF-203ENST00000566078 POP1Q99575 1024 aaKnown RBP33.19■■■□□ 2.9
CTCF-203ENST00000566078 NUP58Q9BVL2 599 aa33.19■■■□□ 2.9
CTCF-203ENST00000566078 TOPORSQ9NS56 1045 aaPredicted RBP33.19■■■□□ 2.9
CTCF-203ENST00000566078 FAM207AQ9NSI2 230 aaPredicted RBP33.19■■■□□ 2.9
CTCF-203ENST00000566078 GCNT4Q9P109 453 aa33.19■■■□□ 2.9
CTCF-203ENST00000566078 PIN4Q9Y237 131 aaKnown RBP33.19■■■□□ 2.9
CTCF-203ENST00000566078 CASP14P31944 242 aa33.18■■■□□ 2.9
CTCF-203ENST00000566078 WNT7BP56706 349 aa33.18■■■□□ 2.9
CTCF-203ENST00000566078 EXOC3L4Q17RC7 722 aa33.18■■■□□ 2.9
CTCF-203ENST00000566078 DCAF4L1Q3SXM0 396 aa33.18■■■□□ 2.9
CTCF-203ENST00000566078 FNBP1Q96RU3 617 aa33.18■■■□□ 2.9
CTCF-203ENST00000566078 PDE11AQ9HCR9 933 aa33.18■■■□□ 2.9
CTCF-203ENST00000566078 CDK7P50613 346 aa33.17■■■□□ 2.9
CTCF-203ENST00000566078 HS1BP3Q53T59 392 aa33.17■■■□□ 2.9
CTCF-203ENST00000566078 SLC27A1Q6PCB7 646 aa33.17■■■□□ 2.9
CTCF-203ENST00000566078 APBB1IPQ7Z5R6 666 aaPredicted RBP33.17■■■□□ 2.9
CTCF-203ENST00000566078 NEK11Q8NG66 645 aa33.17■■■□□ 2.9
CTCF-203ENST00000566078 ZNF830Q96NB3 372 aaPredicted RBP33.17■■■□□ 2.9
CTCF-203ENST00000566078 AKR1B15C9JRZ8 316 aaPredicted RBP33.17■■■□□ 2.9
CTCF-203ENST00000566078 NPTXRO95502 500 aa33.17■■■□□ 2.9
CTCF-203ENST00000566078 MXI1P50539 228 aa33.17■■■□□ 2.9
CTCF-203ENST00000566078 FXR1P51114 621 aaKnown RBP eCLIP33.17■■■□□ 2.9
CTCF-203ENST00000566078 ADKP55263 362 aaKnown RBP33.17■■■□□ 2.9
CTCF-203ENST00000566078 CACTINQ8WUQ7 758 aaKnown RBP33.17■■■□□ 2.9
CTCF-203ENST00000566078 TTYH3Q9C0H2 523 aa33.17■■■□□ 2.9
CTCF-203ENST00000566078 CAND2O75155 1236 aa33.16■■■□□ 2.9
CTCF-203ENST00000566078 RPS6KA5O75582 802 aa33.16■■■□□ 2.9
CTCF-203ENST00000566078 FIGNQ5HY92 759 aa33.16■■■□□ 2.9
CTCF-203ENST00000566078 TMEM117Q9H0C3 514 aa33.16■■■□□ 2.9
CTCF-203ENST00000566078 TTC26A0AVF1 554 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 RBAK-RBAKDNI3L0D1 243 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 EPHB6O15197 1021 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 MFAP3LO75121 409 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 STAG3L1P0CL83 205 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 SLC9A1P19634 815 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 GTF2H1P32780 548 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 MNX1P50219 401 aaPredicted RBP33.15■■■□□ 2.9
CTCF-203ENST00000566078 FAM26DQ5JW98 314 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 LRRC8AQ8IWT6 810 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 TMEM192Q8IY95 271 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 TC2NQ8N9U0 490 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 IQCDQ96DY2 449 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 CGRRF1Q99675 332 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 KCNF1Q9H3M0 494 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 TMEM8AQ9HCN3 771 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 TANC1Q9C0D5 1861 aa33.15■■■□□ 2.9
CTCF-203ENST00000566078 P4HA2O15460 535 aa33.14■■■□□ 2.9
CTCF-203ENST00000566078 TNNI1P19237 187 aa33.14■■■□□ 2.9
CTCF-203ENST00000566078 PON1P27169 355 aa33.14■■■□□ 2.9
CTCF-203ENST00000566078 ENOX2Q16206 610 aaKnown RBP33.14■■■□□ 2.9
CTCF-203ENST00000566078 KYAT1Q16773 422 aa33.14■■■□□ 2.9
CTCF-203ENST00000566078 ZNF618Q5T7W0 954 aa33.14■■■□□ 2.9
CTCF-203ENST00000566078 LMBRD2Q68DH5 695 aaPredicted RBP33.14■■■□□ 2.9
CTCF-203ENST00000566078 CNGA4Q8IV77 575 aa33.14■■■□□ 2.9
CTCF-203ENST00000566078 FAM126BQ8IXS8 530 aa33.14■■■□□ 2.9
CTCF-203ENST00000566078 EIF2AQ9BY44 585 aaKnown RBP33.14■■■□□ 2.9
CTCF-203ENST00000566078 RPF1Q9H9Y2 349 aaKnown RBP33.14■■■□□ 2.9
CTCF-203ENST00000566078 RNF225M0QZC1 329 aaPredicted RBP33.13■■■□□ 2.89
CTCF-203ENST00000566078 CLTAP09496 248 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 CXCL8P10145 99 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 CLDN10P78369 228 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 CETN1Q12798 172 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 LRMPQ12912 555 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 KRT39Q6A163 491 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 FAM212AQ96EL1 285 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 CAPN11Q9UMQ6 739 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP33.13■■■□□ 2.89
CTCF-203ENST00000566078 PTPRJQ12913 1337 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 CKBP12277 381 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 ACTN1P12814 892 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 APBA1Q02410 837 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 FBXO47Q5MNV8 452 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 ST3GAL5Q9UNP4 418 aa33.13■■■□□ 2.89
CTCF-203ENST00000566078 A0A1W2PQJ5 194 aa33.12■■■□□ 2.89
CTCF-203ENST00000566078 GJA8P48165 433 aa33.12■■■□□ 2.89
CTCF-203ENST00000566078 SURF1Q15526 300 aa33.12■■■□□ 2.89
CTCF-203ENST00000566078 TRIM65Q6PJ69 517 aa33.12■■■□□ 2.89
CTCF-203ENST00000566078 CCDC51Q96ER9 411 aa33.12■■■□□ 2.89
CTCF-203ENST00000566078 FAM84AQ96KN4 292 aa33.12■■■□□ 2.89
CTCF-203ENST00000566078 TRIM6Q9C030 488 aaPredicted RBP33.12■■■□□ 2.89
CTCF-203ENST00000566078 INTS2Q9H0H0 1204 aaKnown RBP33.12■■■□□ 2.89
CTCF-203ENST00000566078 PLCB1Q9NQ66 1216 aa33.12■■■□□ 2.89
CTCF-203ENST00000566078 LUC7L2Q9Y383 392 aaKnown RBP33.12■■■□□ 2.89
CTCF-203ENST00000566078 PMM2O15305 246 aa33.11■■■□□ 2.89
CTCF-203ENST00000566078 NOL4O94818 638 aa33.11■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms