RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 RTP2Q5QGT7 225 aa19.54■□□□□ 0.72
HDDC3-205ENST00000559898 ATF7IP2Q5U623 682 aa19.54■□□□□ 0.72
HDDC3-205ENST00000559898 PRSS55Q6UWB4 352 aaPredicted RBP19.54■□□□□ 0.72
HDDC3-205ENST00000559898 CABP7Q86V35 215 aa19.54■□□□□ 0.72
HDDC3-205ENST00000559898 KIFAP3Q92845 792 aa19.54■□□□□ 0.72
HDDC3-205ENST00000559898 IFT74Q96LB3 600 aa19.54■□□□□ 0.72
HDDC3-205ENST00000559898 GOLGA2P5Q9HBQ8 144 aa19.54■□□□□ 0.72
HDDC3-205ENST00000559898 ADAM28Q9UKQ2 775 aa19.54■□□□□ 0.72
HDDC3-205ENST00000559898 DNM3Q9UQ16 869 aa19.54■□□□□ 0.72
HDDC3-205ENST00000559898 TMEM221A6NGB7 291 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 M0R296 226 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 LAD1O00515 517 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 SLC16A4O15374 487 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 RFPL2O75678 378 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 ASGR2P07307 311 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 PLA2G5P39877 138 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 HSP90AA2PQ14568 343 aaPredicted RBP19.53■□□□□ 0.72
HDDC3-205ENST00000559898 BMS1Q14692 1282 aaKnown RBP19.53■□□□□ 0.72
HDDC3-205ENST00000559898 HYIQ5T013 277 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 LARP1BQ659C4 914 aaKnown RBP19.53■□□□□ 0.72
HDDC3-205ENST00000559898 KIAA1841Q6NSI8 718 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 CES5AQ6NT32 575 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 CD300LGQ6UXG3 332 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 TRIM67Q6ZTA4 783 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 ZBTB33Q86T24 672 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 PALB2Q86YC2 1186 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 ZBTB45Q96K62 511 aaPredicted RBP19.53■□□□□ 0.72
HDDC3-205ENST00000559898 ACO2Q99798 780 aaKnown RBP19.53■□□□□ 0.72
HDDC3-205ENST00000559898 TARS2Q9BW92 718 aaKnown RBP19.53■□□□□ 0.72
HDDC3-205ENST00000559898 COLEC11Q9BWP8 271 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 EMILIN2Q9BXX0 1053 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 RXFP1Q9HBX9 757 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 MAN1C1Q9NR34 630 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 DZANK1Q9NVP4 752 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 KMT2EQ8IZD2 1858 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 ZNF318Q5VUA4 2279 aa19.53■□□□□ 0.72
HDDC3-205ENST00000559898 ABLIM1O14639 778 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 ADAM12O43184 909 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 PDGFBP01127 241 aaPredicted RBP19.52■□□□□ 0.72
HDDC3-205ENST00000559898 SLC12A3P55017 1021 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 OSTNP61366 133 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 TUSC3Q13454 348 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 PPP2R5AQ15172 486 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 PTPN21Q16825 1174 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 ARSHQ5FYA8 562 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 GPR149Q86SP6 731 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 HACE1Q8IYU2 909 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 RIN2Q8WYP3 895 aaPredicted RBP19.52■□□□□ 0.72
HDDC3-205ENST00000559898 CDT1Q9H211 546 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 UPF2Q9HAU5 1272 aaKnown RBP19.52■□□□□ 0.72
HDDC3-205ENST00000559898 PTPRHQ9HD43 1115 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 ARHGAP28Q9P2N2 729 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 HCN4Q9Y3Q4 1203 aa19.52■□□□□ 0.72
HDDC3-205ENST00000559898 CARNS1A5YM72 827 aa19.51■□□□□ 0.71
HDDC3-205ENST00000559898 K7ERI5 159 aa19.51■□□□□ 0.71
HDDC3-205ENST00000559898 N4BP1O75113 896 aaKnown RBP19.51■□□□□ 0.71
HDDC3-205ENST00000559898 MTHFRP42898 656 aa19.51■□□□□ 0.71
HDDC3-205ENST00000559898 SOX4Q06945 474 aaPredicted RBP19.51■□□□□ 0.71
HDDC3-205ENST00000559898 CUL4AQ13619 759 aa19.51■□□□□ 0.71
HDDC3-205ENST00000559898 TMEM119Q4V9L6 283 aa19.51■□□□□ 0.71
HDDC3-205ENST00000559898 SEZ6Q53EL9 994 aa19.51■□□□□ 0.71
HDDC3-205ENST00000559898 FAM173BQ6P4H8 233 aa19.51■□□□□ 0.71
HDDC3-205ENST00000559898 C3orf58Q8NDZ4 430 aa19.51■□□□□ 0.71
HDDC3-205ENST00000559898 ASIC4Q96FT7 647 aa19.51■□□□□ 0.71
HDDC3-205ENST00000559898 RAB34Q9BZG1 259 aa19.51■□□□□ 0.71
HDDC3-205ENST00000559898 KIF3AQ9Y496 699 aa19.51■□□□□ 0.71
HDDC3-205ENST00000559898 PDCD11Q14690 1871 aaKnown RBP19.5■□□□□ 0.71
HDDC3-205ENST00000559898 ZMYM2Q9UBW7 1377 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 TADA2AO75478 443 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 BRD1O95696 1058 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 THP07101 528 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 PLA2G4BP0C869 781 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 EFNA5P52803 228 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 ATAT1Q5SQI0 421 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 IER5LQ5T953 404 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 PPFIBP1Q86W92 1011 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 SYT2Q8N9I0 419 aaPredicted RBP19.5■□□□□ 0.71
HDDC3-205ENST00000559898 KREMEN2Q8NCW0 462 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 RIPOR3Q96MK2 946 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 ZMAT2Q96NC0 199 aaKnown RBP19.5■□□□□ 0.71
HDDC3-205ENST00000559898 PPP1R10Q96QC0 940 aaKnown RBP19.5■□□□□ 0.71
HDDC3-205ENST00000559898 ADPGKQ9BRR6 497 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 HAPLN2Q9GZV7 340 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 SFXN1Q9H9B4 322 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 KMT5AQ9NQR1 393 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 FOXD4L1Q9NU39 408 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 LIMD1Q9UGP4 676 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 TNFSF13BQ9Y275 285 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 PHLPP2Q6ZVD8 1323 aa19.5■□□□□ 0.71
HDDC3-205ENST00000559898 I3L4J1 428 aa19.49■□□□□ 0.71
HDDC3-205ENST00000559898 TGM5O43548 720 aa19.49■□□□□ 0.71
HDDC3-205ENST00000559898 HARSP12081 509 aaKnown RBP19.49■□□□□ 0.71
HDDC3-205ENST00000559898 MCM2P49736 904 aa19.49■□□□□ 0.71
HDDC3-205ENST00000559898 CLCNKBP51801 687 aa19.49■□□□□ 0.71
HDDC3-205ENST00000559898 USP41Q3LFD5 358 aa19.49■□□□□ 0.71
HDDC3-205ENST00000559898 USP49Q70CQ1 688 aa19.49■□□□□ 0.71
HDDC3-205ENST00000559898 ST13P5Q8NFI4 369 aaPredicted RBP19.49■□□□□ 0.71
HDDC3-205ENST00000559898 ZNF707Q96C28 371 aaPredicted RBP19.49■□□□□ 0.71
HDDC3-205ENST00000559898 FAM122AQ96E09 287 aa19.49■□□□□ 0.71
HDDC3-205ENST00000559898 NECTIN4Q96NY8 510 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms