RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 VAV3Q9UKW4 847 aa18.8■□□□□ 0.6
VPS29-204ENST00000548259 CDV3Q9UKY7 258 aaKnown RBP18.8■□□□□ 0.6
VPS29-204ENST00000548259 MRPS17Q9Y2R5 130 aaKnown RBP18.8■□□□□ 0.6
VPS29-204ENST00000548259 POTEMA6NI47 508 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 F8W810 466 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 SLC37A4O43826 429 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 BAG4O95429 457 aaKnown RBP18.79■□□□□ 0.6
VPS29-204ENST00000548259 C8AP07357 584 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 XBP1P17861 261 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 RPL17P18621 184 aaKnown RBP18.79■□□□□ 0.6
VPS29-204ENST00000548259 SLC27A1Q6PCB7 646 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 POTEGQ6S5H5 508 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 NEK8Q86SG6 692 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 IFNLR1Q8IU57 520 aaPredicted RBP18.79■□□□□ 0.6
VPS29-204ENST00000548259 FGF13Q92913 245 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 KCNB2Q92953 911 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 DDX23Q9BUQ8 820 aaKnown RBP18.79■□□□□ 0.6
VPS29-204ENST00000548259 PHF20Q9BVI0 1012 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 NXF3Q9H4D5 531 aaKnown RBP18.79■□□□□ 0.6
VPS29-204ENST00000548259 KCNMB3Q9NPA1 279 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 ZSCAN32Q9NX65 697 aa18.79■□□□□ 0.6
VPS29-204ENST00000548259 M0R2N6 131 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 AKAP5P24588 427 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 EVCP57679 992 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 PPP2R5DQ14738 602 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 NCAPH2Q6IBW4 605 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 RTL10Q7L3V2 364 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 CEP57Q86XR8 500 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 SLFN12Q8IYM2 578 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 MAML2Q8IZL2 1156 aaPredicted RBP18.78■□□□□ 0.6
VPS29-204ENST00000548259 PIK3R5Q8WYR1 880 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 NFKBIZQ9BYH8 718 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 FAM126AQ9BYI3 521 aaPredicted RBP18.78■□□□□ 0.6
VPS29-204ENST00000548259 KCNH3Q9ULD8 1083 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 SNX14Q9Y5W7 946 aa18.78■□□□□ 0.6
VPS29-204ENST00000548259 CACNA1BQ00975 2339 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 EPG5Q9HCE0 2579 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 WDR81Q562E7 1941 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 TBC1D4O60343 1298 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 CCNT1O60563 726 aaKnown RBP18.77■□□□□ 0.6
VPS29-204ENST00000548259 LRRN2O75325 713 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 DGAT1O75907 488 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 ARF4P18085 180 aaPredicted RBP18.77■□□□□ 0.6
VPS29-204ENST00000548259 HSPA4P34932 840 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 IRX6P78412 446 aaPredicted RBP18.77■□□□□ 0.6
VPS29-204ENST00000548259 TUSC3Q13454 348 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 PSMD5Q16401 504 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 UVSSAQ2YD98 709 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 FAM171A1Q5VUB5 890 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 PRSS55Q6UWB4 352 aaPredicted RBP18.77■□□□□ 0.6
VPS29-204ENST00000548259 TPH2Q8IWU9 490 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 ST13P5Q8NFI4 369 aaPredicted RBP18.77■□□□□ 0.6
VPS29-204ENST00000548259 DYDC2Q96IM9 177 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 CNTNAP3BQ96NU0 1288 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 RPP25Q9BUL9 199 aaKnown RBP18.77■□□□□ 0.6
VPS29-204ENST00000548259 CNTNAP3Q9BZ76 1288 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 LTB4R2Q9NPC1 389 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 RGL1Q9NZL6 768 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 WRAP73Q9P2S5 460 aaPredicted RBP18.77■□□□□ 0.6
VPS29-204ENST00000548259 GMEB2Q9UKD1 530 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 RAB23Q9ULC3 237 aa18.77■□□□□ 0.6
VPS29-204ENST00000548259 SMG5Q9UPR3 1016 aaKnown RBP18.77■□□□□ 0.6
VPS29-204ENST00000548259 DNAH14Q0VDD8 3507 aa18.77■□□□□ 0.59
VPS29-204ENST00000548259 CCL16O15467 120 aa18.76■□□□□ 0.59
VPS29-204ENST00000548259 NPTXRO95502 500 aa18.76■□□□□ 0.59
VPS29-204ENST00000548259 POU2F2P09086 479 aa18.76■□□□□ 0.59
VPS29-204ENST00000548259 CYP4A11Q02928 519 aa18.76■□□□□ 0.59
VPS29-204ENST00000548259 MBTD1Q05BQ5 628 aa18.76■□□□□ 0.59
VPS29-204ENST00000548259 RTP2Q5QGT7 225 aa18.76■□□□□ 0.59
VPS29-204ENST00000548259 ZNF852Q6ZMS4 543 aa18.76■□□□□ 0.59
VPS29-204ENST00000548259 KLK14Q9P0G3 267 aa18.76■□□□□ 0.59
VPS29-204ENST00000548259 USP18Q9UMW8 372 aa18.76■□□□□ 0.59
VPS29-204ENST00000548259 GPR179Q6PRD1 2367 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 A0A1B0GUA9 196 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 CDKL5O76039 1030 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 RPS9P46781 194 aaKnown RBP18.75■□□□□ 0.59
VPS29-204ENST00000548259 NRLP54845 237 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 NTHL1P78549 312 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 CAPSQ13938 189 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 CTTNQ14247 550 aaKnown RBP18.75■□□□□ 0.59
VPS29-204ENST00000548259 AMHR2Q16671 573 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 TMEM132AQ24JP5 1023 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 PABPC1LQ4VXU2 614 aaKnown RBP18.75■□□□□ 0.59
VPS29-204ENST00000548259 ZBTB44Q8NCP5 570 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 GSTCDQ8NEC7 633 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 SLC7A14Q8TBB6 771 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 CLSTN3Q9BQT9 956 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 RTKNQ9BST9 563 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 EPC1Q9H2F5 836 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 ANKEF1Q9NU02 776 aa18.75■□□□□ 0.59
VPS29-204ENST00000548259 DAXXQ9UER7 740 aaPredicted RBP18.75■□□□□ 0.59
VPS29-204ENST00000548259 THP07101 528 aa18.74■□□□□ 0.59
VPS29-204ENST00000548259 ATXN1P54253 815 aaKnown RBP18.74■□□□□ 0.59
VPS29-204ENST00000548259 TPRG1Q6ZUI0 275 aa18.74■□□□□ 0.59
VPS29-204ENST00000548259 LNX1Q8TBB1 728 aaPredicted RBP18.74■□□□□ 0.59
VPS29-204ENST00000548259 RABGGTAQ92696 567 aa18.74■□□□□ 0.59
VPS29-204ENST00000548259 CLDN23Q96B33 292 aa18.74■□□□□ 0.59
VPS29-204ENST00000548259 ZNF274Q96GC6 653 aaPredicted RBP18.74■□□□□ 0.59
VPS29-204ENST00000548259 PRIMPOLQ96LW4 560 aa18.74■□□□□ 0.59
VPS29-204ENST00000548259 KXD1Q9BQD3 176 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms