RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SAGE1Q9NXZ1 904 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 RBAKQ9NYW8 714 aaPredicted RBP19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 SSU72P8A0A1W2PR75 194 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 KRT86O43790 486 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 HMGCRP04035 888 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 RPLP2P05387 115 aaKnown RBP19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 ANXA13P27216 316 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 GCLMP48507 274 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 CHMP4BP1P59074 171 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 NKX3-2P78367 333 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 MCL1Q07820 350 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 RAPGEF1Q13905 1077 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 SPA17Q15506 151 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 CBWD6Q4V339 395 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 CBWD3Q5JTY5 395 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 CBWD5Q5RIA9 395 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 MARCH8Q5T0T0 291 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 TMCO3Q6UWJ1 677 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 KRT222Q8N1A0 295 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 C7orf31Q8N865 590 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 NHEJ1Q9H9Q4 299 aaPredicted RBP19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 AIPL1Q9NZN9 384 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 APEX2Q9UBZ4 518 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 TNFSF13BQ9Y275 285 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 THSD7BQ9C0I4 1608 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 C17orf102A2RUQ5 167 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 MBLAC1A4D2B0 266 aaPredicted RBP19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 OGTO15294 1046 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 STAT1P42224 750 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 VEGFBP49765 207 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 PURAQ00577 322 aaKnown RBP19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 GNASQ5JWF2 1037 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 SLC35F6Q8N357 371 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 LRRN4CLQ8ND94 238 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 TRPV1Q8NER1 839 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 RAET1EQ8TD07 263 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 LENG1Q96BZ8 264 aaPredicted RBP19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 GCOM2Q9BZD3 368 aaPredicted RBP19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 USP20Q9Y2K6 914 aa19.69■□□□□ 0.74
CCDC88C-203ENST00000389856 CNTNAP2Q9UHC6 1331 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 A0A087WZ62 844 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 LRRIQ3A6PVS8 624 aaPredicted RBP19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 GPR25O00155 361 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 ZC3H11AO75152 810 aaKnown RBP eCLIP19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 ERLIN2O94905 339 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 CYP2C9P11712 490 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 FERP16591 822 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 GPC3P51654 580 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 CLCN6P51797 869 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 DLG4P78352 724 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 BEX3Q00994 111 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 POU5F1Q01860 360 aaKnown RBP19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 PPP3CAQ08209 521 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 ZNF568Q3ZCX4 644 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 VPS36Q86VN1 386 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 KIAA0319LQ8IZA0 1049 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 NME8Q8N427 588 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 FBXL13Q8NEE6 735 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 PXYLP1Q8TE99 480 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 FDXACB1Q9BRP7 624 aaPredicted RBP19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 STK33Q9BYT3 514 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 IFT122Q9HBG6 1241 aa19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 REXO2Q9Y3B8 237 aaKnown RBP19.68■□□□□ 0.74
CCDC88C-203ENST00000389856 AKR1B10O60218 316 aa19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 DLATP10515 647 aaKnown RBP19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 ACTN1P12814 892 aa19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 FAM193AP78312 1265 aa19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 CLDN10P78369 228 aa19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 CACNB2Q08289 660 aaPredicted RBP19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 MAPK8IP2Q13387 824 aaPredicted RBP19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 EPC2Q52LR7 807 aa19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 TDRD12Q587J7 1177 aaKnown RBP19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 CD99L2Q8TCZ2 262 aa19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 IRX2Q9BZI1 471 aaPredicted RBP19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 TMEM117Q9H0C3 514 aa19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 SIX2Q9NPC8 291 aa19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 XPNPEP3Q9NQH7 507 aa19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 COQ4Q9Y3A0 265 aa19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 FHOD1Q9Y613 1164 aa19.67■□□□□ 0.74
CCDC88C-203ENST00000389856 TULP1O00294 542 aaPredicted RBP19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 FKTNO75072 461 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 VTNP04004 478 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 MCF2P10911 925 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 PRKAR2AP13861 404 aaKnown RBP19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 TNNI1P19237 187 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 PROZP22891 400 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 ACOT2P49753 483 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 NLRP11P59045 1033 aaKnown RBP19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 BRD3Q15059 726 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 C1orf220Q5T0J3 134 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 TAF2Q6P1X5 1199 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 KIAA1328Q86T90 577 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 BRSK2Q8IWQ3 736 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 PCSK9Q8NBP7 692 aaKnown RBP19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 ZBTB45Q96K62 511 aaPredicted RBP19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 CGRRF1Q99675 332 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 ADPGKQ9BRR6 497 aa19.66■□□□□ 0.74
CCDC88C-203ENST00000389856 ANO9A1A5B4 782 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 GJB1P08034 283 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 HARSP12081 509 aaKnown RBP19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms