RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 AP1S3Q96PC3 154 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 MRPL47Q9HD33 250 aaKnown RBP11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 KRCC1Q9NPI7 259 aaPredicted RBP11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 HESX1Q9UBX0 185 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 PCDHGB4Q9UN71 923 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 UBTFL6P0CB48 400 aaPredicted RBP11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 ARFIP2P53365 341 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 SLFN12Q8IYM2 578 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 LARP4BQ92615 738 aaKnown RBP11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 MRPL1Q9BYD6 325 aaKnown RBP11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 USP40Q9NVE5 1235 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 STK17AQ9UEE5 414 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 DAPK2Q9UIK4 370 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 SPDYE5A6NIY4 337 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 ACADSP16219 412 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 SPDYE7PQ495Y7 208 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 AGGF1Q8N302 714 aaeCLIP11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 C8orf37Q96NL8 207 aa11.78□□□□□ -0.52
HDGFL3-201ENST00000299633 CARMIL3Q8ND23 1372 aa11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 BCL10O95999 233 aa11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 TRIP13Q15645 432 aaPredicted RBP11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 IZUMO1Q8IYV9 350 aa11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 GALNT4Q8N4A0 578 aa11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 REXO4Q9GZR2 422 aaKnown RBP11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 ARMCX5Q6P1M9 558 aa11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 COLGALT2Q8IYK4 626 aa11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 PRDM15P57071 1507 aaPredicted RBP11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 ZSWIM7Q19AV6 140 aa11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 FAM102BQ5T8I3 360 aa11.77□□□□□ -0.52
HDGFL3-201ENST00000299633 PAX7P23759 505 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 NFIL3Q16649 462 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 CCDC157Q569K6 752 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 GRAMD1CQ8IYS0 662 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 TOM1O60784 492 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 PKN3Q6P5Z2 889 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 APOA5Q6Q788 366 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 TPTE2Q6XPS3 522 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 CDK5RAP2Q96SN8 1893 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 PANK4Q9NVE7 773 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 MAD2L2Q9UI95 211 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 TET3O43151 1660 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 CTIFO43310 598 aaKnown RBP11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 AHCYL1O43865 530 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 FTCDO95954 541 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 FAM200BP0CF97 657 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 ABRAXAS1Q6UWZ7 409 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 ANKS3Q6ZW76 656 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 RHPN2Q8IUC4 686 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 GCKRQ14397 625 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 RFT1Q96AA3 541 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 ANKRD27Q96NW4 1050 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 POLR1BQ9H9Y6 1135 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 FER1L6Q2WGJ9 1857 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 SLC16A1P53985 500 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 KRT25Q7Z3Z0 450 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 EPN3Q9H201 632 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 SKAP2O75563 359 aaPredicted RBP11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 ZBED1O96006 694 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 CCDC130P13994 396 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 DDB1Q16531 1140 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 USP39Q53GS9 565 aaKnown RBP11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 CABP7Q86V35 215 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 CROCCP3Q8IVE0 287 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 NDUFAF2Q8N183 169 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 ZNF786Q8N393 782 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 PPM1KQ8N3J5 372 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 GCOM2Q9BZD3 368 aaPredicted RBP11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 APOA4P06727 396 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 LIG4P49917 911 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 POLR2FP61218 127 aaKnown RBP11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 ARHGEF25Q86VW2 580 aa11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 TMA16Q96EY4 203 aaKnown RBP11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 RTCBQ9Y3I0 505 aaKnown RBP11.77□□□□□ -0.53
HDGFL3-201ENST00000299633 MAGI3Q5TCQ9 1506 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 MLH3Q9UHC1 1453 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 PRR23AA6NEV1 266 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 HNRNPH1P31943 449 aaKnown RBP11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 PRPSAP2O60256 369 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 CCNCP24863 283 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 HMOX2P30519 316 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 ARL4AP40617 200 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 EPS8Q12929 822 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 CEP170Q5SW79 1584 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 PODXLO00592 558 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 MRPL48Q96GC5 212 aaKnown RBP11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 GGT7Q9UJ14 662 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 NEURL1BA8MQ27 555 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 EIF3HO15372 352 aaKnown RBP eCLIP11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 PRPF4O43172 522 aaKnown RBP eCLIP11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 ZAP70P43403 619 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 BBS9Q3SYG4 887 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 TSPAN18Q96SJ8 248 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 E5RI56 91 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 NPM3O75607 178 aaKnown RBP11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 ABATP80404 500 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 DPP10Q8N608 796 aa11.76□□□□□ -0.53
HDGFL3-201ENST00000299633 GINM1Q9NU53 330 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms