RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ANKRD63C9JTQ0 380 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 HOXC8P31273 242 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 PRKCIP41743 596 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 ARID5AQ03989 594 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 TFDP1Q14186 410 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 CDCA2Q69YH5 1023 aaPredicted RBP24.52■■□□□ 1.52
CDX1-201ENST00000231656 GJB7Q6PEY0 223 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 KIAA0319LQ8IZA0 1049 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 ZSWIM2Q8NEG5 633 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 SECISBP2LQ93073 1101 aaKnown RBP24.52■■□□□ 1.52
CDX1-201ENST00000231656 TMEM134Q9H6X4 195 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 AKT3Q9Y243 479 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 K7ERI5 159 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 ADSSP30520 456 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 VAMP7P51809 220 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 DLG4P78352 724 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 SLC18A3Q16572 532 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 NBPF20Q3BBV1 942 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 C1orf220Q5T0J3 134 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 RSRC2Q7L4I2 434 aaKnown RBP24.52■■□□□ 1.52
CDX1-201ENST00000231656 PDCL2Q8N4E4 241 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 UBXN4Q92575 508 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 NLRP4Q96MN2 994 aa24.52■■□□□ 1.52
CDX1-201ENST00000231656 INTS2Q9H0H0 1204 aaKnown RBP24.52■■□□□ 1.52
CDX1-201ENST00000231656 MACROD2A1Z1Q3 448 aa24.51■■□□□ 1.51
CDX1-201ENST00000231656 C17orf102A2RUQ5 167 aa24.51■■□□□ 1.51
CDX1-201ENST00000231656 VTNP04004 478 aa24.51■■□□□ 1.51
CDX1-201ENST00000231656 EFNA5P52803 228 aa24.51■■□□□ 1.51
CDX1-201ENST00000231656 STRN3Q13033 797 aa24.51■■□□□ 1.51
CDX1-201ENST00000231656 ZNF668Q96K58 619 aaPredicted RBP24.51■■□□□ 1.51
CDX1-201ENST00000231656 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.51■■□□□ 1.51
CDX1-201ENST00000231656 BZW2Q9Y6E2 419 aaKnown RBP24.51■■□□□ 1.51
CDX1-201ENST00000231656 ZNF200P98182 395 aaPredicted RBP24.5■■□□□ 1.51
CDX1-201ENST00000231656 PTK2Q05397 1052 aa24.5■■□□□ 1.51
CDX1-201ENST00000231656 PAPD7Q5XG87 772 aaKnown RBP24.5■■□□□ 1.51
CDX1-201ENST00000231656 SLC39A4Q6P5W5 647 aa24.5■■□□□ 1.51
CDX1-201ENST00000231656 TRAPPC11Q7Z392 1133 aa24.5■■□□□ 1.51
CDX1-201ENST00000231656 SRGAP1Q7Z6B7 1085 aa24.5■■□□□ 1.51
CDX1-201ENST00000231656 TXLNBQ8N3L3 684 aa24.5■■□□□ 1.51
CDX1-201ENST00000231656 LMO3Q8TAP4 145 aa24.5■■□□□ 1.51
CDX1-201ENST00000231656 PLEKHO2Q8TD55 490 aa24.5■■□□□ 1.51
CDX1-201ENST00000231656 MYH10P35580 1976 aa24.5■■□□□ 1.51
CDX1-201ENST00000231656 A0A087X0T9 212 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 TREHO43280 583 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 ATP1A1P05023 1023 aaKnown RBP24.49■■□□□ 1.51
CDX1-201ENST00000231656 ADRB2P07550 413 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 FAM228BP0C875 321 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 GNAT1P11488 350 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 PPP3CAQ08209 521 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 WHAMMP3Q1A5X7 153 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 ZNF571Q7Z3V5 609 aaPredicted RBP24.49■■□□□ 1.51
CDX1-201ENST00000231656 ZBTB8OSQ8IWT0 167 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 CEP112Q8N8E3 955 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 CCDC113Q9H0I3 377 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 UNC93B1Q9H1C4 597 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 C2orf40Q9H1Z8 148 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 DAAM1Q9Y4D1 1078 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 SMIM35A0A1B0GVV1 85 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 HNRNPDLO14979 420 aaKnown RBP24.49■■□□□ 1.51
CDX1-201ENST00000231656 HSPA8P11142 646 aaKnown RBP24.49■■□□□ 1.51
CDX1-201ENST00000231656 CYP2C9P11712 490 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 PTENP60484 403 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 POU5F1BQ06416 359 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 RUFY4Q6ZNE9 571 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 NFKBIZQ9BYH8 718 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 STK33Q9BYT3 514 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 IFT122Q9HBG6 1241 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 GTF2IRD1Q9UHL9 959 aa24.49■■□□□ 1.51
CDX1-201ENST00000231656 ANO9A1A5B4 782 aa24.48■■□□□ 1.51
CDX1-201ENST00000231656 ENC1O14682 589 aa24.48■■□□□ 1.51
CDX1-201ENST00000231656 P4HA2O15460 535 aa24.48■■□□□ 1.51
CDX1-201ENST00000231656 RRP9O43818 475 aaKnown RBP24.48■■□□□ 1.51
CDX1-201ENST00000231656 N4BP1O75113 896 aaKnown RBP24.48■■□□□ 1.51
CDX1-201ENST00000231656 ANXA13P27216 316 aa24.48■■□□□ 1.51
CDX1-201ENST00000231656 ENOX2Q16206 610 aaKnown RBP24.48■■□□□ 1.51
CDX1-201ENST00000231656 BICD1Q96G01 975 aa24.48■■□□□ 1.51
CDX1-201ENST00000231656 PPP1R16BQ96T49 567 aa24.48■■□□□ 1.51
CDX1-201ENST00000231656 FAM49AQ9H0Q0 323 aaPredicted RBP24.48■■□□□ 1.51
CDX1-201ENST00000231656 APEX2Q9UBZ4 518 aa24.48■■□□□ 1.51
CDX1-201ENST00000231656 DNAJC12Q9UKB3 198 aa24.48■■□□□ 1.51
CDX1-201ENST00000231656 CAPN6Q9Y6Q1 641 aa24.48■■□□□ 1.51
CDX1-201ENST00000231656 A0A087WZ62 844 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 GOLGA8IPA6NC78 632 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 GOLGA8JA6NMD2 632 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 EDN1P05305 212 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 ACLYP53396 1101 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 CBWD2Q8IUF1 395 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 TRIM58Q8NG06 486 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 FBXL18Q96ME1 805 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 FDXACB1Q9BRP7 624 aaPredicted RBP24.47■■□□□ 1.51
CDX1-201ENST00000231656 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP24.47■■□□□ 1.51
CDX1-201ENST00000231656 GPR88Q9GZN0 384 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 LUC7LQ9NQ29 371 aaKnown RBP24.47■■□□□ 1.51
CDX1-201ENST00000231656 ADAMTS1Q9UHI8 967 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 SALL4Q9UJQ4 1053 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 USP20Q9Y2K6 914 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 F8VZ95 297 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 PMM2O15305 246 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 TACC1O75410 805 aa24.47■■□□□ 1.51
CDX1-201ENST00000231656 MOCS3O95396 460 aa24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms