RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 NT5C1B-RDH14C9J2C7 533 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 C5orf67F2Z3F1 127 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 K7ERI5 159 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 INPPL1O15357 1258 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 TRAK2O60296 914 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 ERLIN2O94905 339 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 EOMESO95936 686 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 POMCP01189 267 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 ITGB1P05556 798 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 AXLP30530 894 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 IRS1P35568 1242 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 BMPR1AP36894 532 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 MLH1P40692 756 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 TNFSF9P41273 254 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 AFMP43652 599 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 GTF2BQ00403 316 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 COASYQ13057 564 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 DMP1Q13316 513 aaPredicted RBP10.14□□□□□ -0.79
VPS35-206ENST00000565228 PPP2R5AQ15172 486 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 ATF7IP2Q5U623 682 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 CNNM4Q6P4Q7 775 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 NOTUMQ6P988 496 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 CD300LGQ6UXG3 332 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 ZBTB33Q86T24 672 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 ZBTB8OSQ8IWT0 167 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 FIBCD1Q8N539 461 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 FSIP1Q8NA03 581 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 KLHL23Q8NBE8 558 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 RABGGTAQ92696 567 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 ERCC4Q92889 916 aaPredicted RBP10.14□□□□□ -0.79
VPS35-206ENST00000565228 FAM84AQ96KN4 292 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 IFT74Q96LB3 600 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 PRIMPOLQ96LW4 560 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 ZMAT2Q96NC0 199 aaKnown RBP10.14□□□□□ -0.79
VPS35-206ENST00000565228 TGS1Q96RS0 853 aaKnown RBP10.14□□□□□ -0.79
VPS35-206ENST00000565228 PAAF1Q9BRP4 392 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 TMEM117Q9H0C3 514 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 C2orf40Q9H1Z8 148 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 ZHX3Q9H4I2 956 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 PARVGQ9HBI0 331 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 ALG13Q9NP73 1137 aaKnown RBP10.14□□□□□ -0.79
VPS35-206ENST00000565228 DACT1Q9NYF0 836 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 CIZ1Q9ULV3 898 aaPredicted RBP10.14□□□□□ -0.79
VPS35-206ENST00000565228 TBX20Q9UMR3 447 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 TNFSF13BQ9Y275 285 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 MTCH2Q9Y6C9 303 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 ZMYM2Q9UBW7 1377 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 VWA8A3KMH1 1905 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 ARL5CA6NH57 179 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 H3BNC9 293 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 K7ENM7 598 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 PRPF6O94906 941 aaKnown RBP10.13□□□□□ -0.79
VPS35-206ENST00000565228 FAM13AO94988 1023 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 CSPG5O95196 566 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 EFEMP2O95967 443 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 PIGRP01833 764 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 STAG3L1P0CL83 205 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 ADSSP30520 456 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 SLC11A1P49279 550 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 SCNN1GP51170 649 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 SLC27A1Q6PCB7 646 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 EPM2AIP1Q7L775 607 aaPredicted RBP10.13□□□□□ -0.79
VPS35-206ENST00000565228 FMR1NBQ8N0W7 255 aaPredicted RBP10.13□□□□□ -0.79
VPS35-206ENST00000565228 COLGALT1Q8NBJ5 622 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 FEZF2Q8TBJ5 459 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 SPPL3Q8TCT6 385 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 SCAND2PQ9GZW5 306 aaPredicted RBP10.13□□□□□ -0.79
VPS35-206ENST00000565228 TNMDQ9H2S6 317 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 ST6GALNAC4Q9H4F1 302 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 RSAD1Q9HA92 442 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 C17orf75Q9HAS0 396 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 PANK4Q9NVE7 773 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 MARCH5Q9NX47 278 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 CHMP5Q9NZZ3 219 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 LRFN2Q9ULH4 789 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 INPP5FQ9Y2H2 1132 aa10.13□□□□□ -0.79
VPS35-206ENST00000565228 N4BP3O15049 544 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 RECQL4O94761 1208 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 ZNF202O95125 648 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 SLFN14P0C7P3 912 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 ITGA4P13612 1032 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 IDEP14735 1019 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 POU3F3P20264 500 aaPredicted RBP10.12□□□□□ -0.79
VPS35-206ENST00000565228 CTNNB1P35222 781 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 GTF2F1P35269 517 aaKnown RBP eCLIP10.12□□□□□ -0.79
VPS35-206ENST00000565228 ANP32AP39687 249 aaKnown RBP10.12□□□□□ -0.79
VPS35-206ENST00000565228 TXLNAP40222 546 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 RAB27AP51159 221 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 EFNA5P52803 228 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 ERVFC1P60507 584 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 OSTNP61366 133 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 SOX4Q06945 474 aaPredicted RBP10.12□□□□□ -0.79
VPS35-206ENST00000565228 DSC1Q08554 894 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 PCBP1Q15365 356 aaKnown RBP eCLIP10.12□□□□□ -0.79
VPS35-206ENST00000565228 SLC10A6Q3KNW5 377 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 XKR4Q5GH76 650 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 NOMO2Q5JPE7 1267 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 CRELD2Q6UXH1 353 aaPredicted RBP10.12□□□□□ -0.79
VPS35-206ENST00000565228 ALKAL1Q6UXT8 129 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 KRBA2Q6ZNG9 492 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms