RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 AFG3L2Q9Y4W6 797 aa8.1□□□□□ -1.11
HDAC3-216ENST00000523088 SIPA1L1O43166 1804 aa8.1□□□□□ -1.11
HDAC3-216ENST00000523088 FLT1P17948 1338 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 ADGRA2Q96PE1 1338 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 USP17L5A8MUK1 530 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 NCAM2O15394 837 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 MAP3K7O43318 606 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 USO1O60763 962 aaKnown RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 IDH1O75874 414 aaKnown RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 FSBPO95073 299 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 SNX4O95219 450 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 SERPINC1P01008 464 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 TUBB4AP04350 444 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 ALDH2P05091 517 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 CYP2E1P05181 493 aaPredicted RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 IFIT2P09913 472 aaKnown RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 SCG2P13521 617 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 OSBPP22059 807 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 IL32P24001 234 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 ATP6V1E1P36543 226 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 ACADVLP49748 655 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 GUCY2FP51841 1108 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 RRP1P56182 461 aaKnown RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 C21orf58P58505 322 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 KLHL30Q0D2K2 578 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 GNL2Q13823 731 aaKnown RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 SPIDRQ14159 915 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 CLUL1Q15846 466 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 ANO4Q32M45 955 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 PDE12Q6L8Q7 609 aaKnown RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 DRICH1Q6PGQ1 229 aaPredicted RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 PI16Q6UXB8 463 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 C3orf62Q6ZUJ4 267 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 SH3BP5LQ7L8J4 393 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 AACSQ86V21 672 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 METTL16Q86W50 562 aaKnown RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 NKAIN4Q8IVV8 208 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 CAMKK1Q8N5S9 505 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 SCAIQ8N9R8 606 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 TMEM87AQ8NBN3 555 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 ARRDC4Q8NCT1 418 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 BBOF1Q8ND07 529 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 RHPN1Q8TCX5 695 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 ZNF384Q8TF68 577 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 ATXN2LQ8WWM7 1075 aaKnown RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 FATE1Q969F0 183 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 ZNF333Q96JL9 665 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 PRPF18Q99633 342 aaKnown RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 HERPUD2Q9BSE4 406 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 EHD4Q9H223 541 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 CLSTN2Q9H4D0 955 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 ATP13A1Q9HD20 1204 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 RTEL1Q9NZ71 1219 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 CNTN3Q9P232 1028 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 RASAL2Q9UJF2 1139 aa8.09□□□□□ -1.11
HDAC3-216ENST00000523088 TNRC18O15417 2968 aaPredicted RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 DDX60LQ5H9U9 1706 aaKnown RBP8.09□□□□□ -1.11
HDAC3-216ENST00000523088 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 A6NHS1 94 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 SOWAHDA6NJG2 315 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 CCDC169A6NNP5 214 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 BIN1O00499 593 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 TRDMT1O14717 391 aaKnown RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 HOXC11O43248 304 aaPredicted RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 LUC7L3O95232 432 aaKnown RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 SLU7O95391 586 aaKnown RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 SLC4A1P02730 911 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 PCNAP12004 261 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 TNFAIP3P21580 790 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 CYP7A1P22680 504 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 CES1P23141 567 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 ANXA13P27216 316 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 CD86P42081 329 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 ZAP70P43403 619 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 GNAQP50148 359 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 THOP1P52888 689 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 EPHB1P54762 984 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 PLTPP55058 493 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 EVCP57679 992 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 SSTP61278 116 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 GSTM4Q03013 218 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 IFFO1Q0D2I5 559 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 SSPNQ14714 243 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 FAM110CQ1W6H9 321 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 SH3D19Q5HYK7 790 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 TATDN1Q6P1N9 297 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 GADL1Q6ZQY3 521 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 CEP128Q6ZU80 1094 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 TTC6Q86TZ1 520 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 CCDC84Q86UT8 332 aaPredicted RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 ZFPM1Q8IX07 1006 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 TBC1D21Q8IYX1 336 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 XXYLT1Q8NBI6 393 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 NSUN7Q8NE18 718 aaKnown RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 RAET1EQ8TD07 263 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 PANK1Q8TE04 598 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 SH3RF3Q8TEJ3 882 aaPredicted RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 KAT2BQ92831 832 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 EAF2Q96CJ1 260 aaPredicted RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 ITPKCQ96DU7 683 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms