RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 USP11P51784 963 aa17.47■□□□□ 0.39
HDAC6-236ENST00000498808 NPEPPSP55786 919 aa17.47■□□□□ 0.39
HDAC6-236ENST00000498808 ADCK5Q3MIX3 580 aa17.47■□□□□ 0.39
HDAC6-236ENST00000498808 GPR65Q8IYL9 337 aa17.47■□□□□ 0.39
HDAC6-236ENST00000498808 ZNF579Q8NAF0 562 aaKnown RBP17.47■□□□□ 0.39
HDAC6-236ENST00000498808 CNNM3Q8NE01 707 aa17.47■□□□□ 0.39
HDAC6-236ENST00000498808 SECISBP2LQ93073 1101 aaKnown RBP17.47■□□□□ 0.39
HDAC6-236ENST00000498808 JPH2Q9BR39 696 aaPredicted RBP17.47■□□□□ 0.39
HDAC6-236ENST00000498808 UBN1Q9NPG3 1134 aa17.47■□□□□ 0.39
HDAC6-236ENST00000498808 ANO2Q9NQ90 1003 aa17.47■□□□□ 0.39
HDAC6-236ENST00000498808 USP18Q9UMW8 372 aa17.47■□□□□ 0.39
HDAC6-236ENST00000498808 HES2Q9Y543 173 aa17.47■□□□□ 0.39
HDAC6-236ENST00000498808 CFAP47Q6ZTR5 3102 aa17.47■□□□□ 0.39
HDAC6-236ENST00000498808 USP24Q9UPU5 2620 aa17.47■□□□□ 0.39
HDAC6-236ENST00000498808 PRPF3O43395 683 aaKnown RBP17.46■□□□□ 0.39
HDAC6-236ENST00000498808 SRGAP2CP0DJJ0 459 aa17.46■□□□□ 0.39
HDAC6-236ENST00000498808 TARSP26639 723 aaKnown RBP17.46■□□□□ 0.39
HDAC6-236ENST00000498808 MAGEA9P43362 315 aa17.46■□□□□ 0.39
HDAC6-236ENST00000498808 USP41Q3LFD5 358 aa17.46■□□□□ 0.39
HDAC6-236ENST00000498808 Q4G0T1 1027 aa17.46■□□□□ 0.39
HDAC6-236ENST00000498808 TSSK4Q6SA08 328 aa17.46■□□□□ 0.39
HDAC6-236ENST00000498808 BICD2Q8TD16 824 aa17.46■□□□□ 0.39
HDAC6-236ENST00000498808 PRPF31Q8WWY3 499 aaKnown RBP17.46■□□□□ 0.39
HDAC6-236ENST00000498808 FGF13Q92913 245 aa17.46■□□□□ 0.39
HDAC6-236ENST00000498808 TMEM143Q96AN5 459 aa17.46■□□□□ 0.39
HDAC6-236ENST00000498808 COLEC11Q9BWP8 271 aa17.46■□□□□ 0.39
HDAC6-236ENST00000498808 FBXW11Q9UKB1 542 aa17.46■□□□□ 0.39
HDAC6-236ENST00000498808 NAP1L2Q9ULW6 460 aaPredicted RBP17.46■□□□□ 0.39
HDAC6-236ENST00000498808 TDP2O95551 362 aa17.45■□□□□ 0.38
HDAC6-236ENST00000498808 PSMC5P62195 406 aa17.45■□□□□ 0.38
HDAC6-236ENST00000498808 LAMTOR4Q0VGL1 99 aa17.45■□□□□ 0.38
HDAC6-236ENST00000498808 PRSS55Q6UWB4 352 aaPredicted RBP17.45■□□□□ 0.38
HDAC6-236ENST00000498808 RSPO2Q6UXX9 243 aaPredicted RBP17.45■□□□□ 0.38
HDAC6-236ENST00000498808 MTSS1LQ765P7 747 aa17.45■□□□□ 0.38
HDAC6-236ENST00000498808 RASEFQ8IZ41 740 aa17.45■□□□□ 0.38
HDAC6-236ENST00000498808 TBCKQ8TEA7 893 aa17.45■□□□□ 0.38
HDAC6-236ENST00000498808 PSPC1Q8WXF1 523 aaKnown RBP17.45■□□□□ 0.38
HDAC6-236ENST00000498808 CLDN23Q96B33 292 aa17.45■□□□□ 0.38
HDAC6-236ENST00000498808 DHX33Q9H6R0 707 aaKnown RBP17.45■□□□□ 0.38
HDAC6-236ENST00000498808 NOTCH4Q99466 2003 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 CCDC196A0A1B0GTZ2 297 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 TBC1D4O60343 1298 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 TSPAN1O60635 241 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 NR1I2O75469 434 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 PFKPQ01813 784 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 RTP2Q5QGT7 225 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 ZBTB41Q5SVQ8 909 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 RNF20Q5VTR2 975 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 GSTCDQ8NEC7 633 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 CCDC148Q8NFR7 591 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 ITFG1Q8TB96 612 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 ETNPPLQ8TBG4 499 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 SLC7A3Q8WY07 619 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 RABGGTAQ92696 567 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 KXD1Q9BQD3 176 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 PRMT8Q9NR22 394 aaPredicted RBP17.44■□□□□ 0.38
HDAC6-236ENST00000498808 BMP2KQ9NSY1 1161 aaPredicted RBP17.44■□□□□ 0.38
HDAC6-236ENST00000498808 VPS54Q9P1Q0 977 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 ADAM28Q9UKQ2 775 aa17.44■□□□□ 0.38
HDAC6-236ENST00000498808 NID2Q14112 1375 aa17.43■□□□□ 0.38
HDAC6-236ENST00000498808 EML1O00423 815 aa17.43■□□□□ 0.38
HDAC6-236ENST00000498808 HNRNPA1P09651 372 aaKnown RBP eCLIP17.43■□□□□ 0.38
HDAC6-236ENST00000498808 CREMQ03060 361 aa17.43■□□□□ 0.38
HDAC6-236ENST00000498808 FZD5Q13467 585 aa17.43■□□□□ 0.38
HDAC6-236ENST00000498808 TPRG1Q6ZUI0 275 aa17.43■□□□□ 0.38
HDAC6-236ENST00000498808 RNF149Q8NC42 400 aa17.43■□□□□ 0.38
HDAC6-236ENST00000498808 CPB2Q96IY4 423 aa17.43■□□□□ 0.38
HDAC6-236ENST00000498808 APOL6Q9BWW8 343 aa17.43■□□□□ 0.38
HDAC6-236ENST00000498808 WRAP73Q9P2S5 460 aaPredicted RBP17.43■□□□□ 0.38
HDAC6-236ENST00000498808 CACNG4Q9UBN1 327 aa17.43■□□□□ 0.38
HDAC6-236ENST00000498808 CHD6Q8TD26 2715 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 CYP3A7-CYP3A51PA0A087WV96 503 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 SHISA7A6NL88 538 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 CCL16O15467 120 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 ERLIN2O94905 339 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 C8AP07357 584 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 CYP3A7P24462 503 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 RPS9P46781 194 aaKnown RBP17.42■□□□□ 0.38
HDAC6-236ENST00000498808 NTRK3Q16288 839 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 TSGA10IPQ3SY00 556 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 FERMT3Q86UX7 667 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 CEP170P1Q96L14 293 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 CLSTN3Q9BQT9 956 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 PHF20Q9BVI0 1012 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 CSRNP2Q9H175 543 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 NXF3Q9H4D5 531 aaKnown RBP17.42■□□□□ 0.38
HDAC6-236ENST00000498808 GMEB2Q9UKD1 530 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 GIT1Q9Y2X7 761 aa17.42■□□□□ 0.38
HDAC6-236ENST00000498808 AXLP30530 894 aa17.41■□□□□ 0.38
HDAC6-236ENST00000498808 HOXA9P31269 272 aa17.41■□□□□ 0.38
HDAC6-236ENST00000498808 QARSP47897 775 aaKnown RBP17.41■□□□□ 0.38
HDAC6-236ENST00000498808 PPM1JQ5JR12 505 aa17.41■□□□□ 0.38
HDAC6-236ENST00000498808 PPM1LQ5SGD2 360 aa17.41■□□□□ 0.38
HDAC6-236ENST00000498808 LIN9Q5TKA1 542 aa17.41■□□□□ 0.38
HDAC6-236ENST00000498808 NOTUMQ6P988 496 aa17.41■□□□□ 0.38
HDAC6-236ENST00000498808 NPAS3Q8IXF0 933 aa17.41■□□□□ 0.38
HDAC6-236ENST00000498808 CCDC51Q96ER9 411 aa17.41■□□□□ 0.38
HDAC6-236ENST00000498808 PAAF1Q9BRP4 392 aa17.41■□□□□ 0.38
HDAC6-236ENST00000498808 POLIQ9UNA4 740 aa17.41■□□□□ 0.38
HDAC6-236ENST00000498808 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms