RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 GPS1Q13098 491 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 EFL1Q7Z2Z2 1120 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 PPM1NQ8N819 430 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 IGF1RP08069 1367 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 NOS1P29475 1434 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 CCDC130P13994 396 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 RGS2P41220 211 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 ANKS6Q68DC2 871 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 STAG2Q8N3U4 1231 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 ADAM22Q9P0K1 906 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 PFKFB2O60825 505 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 KLHL2O95198 593 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 ME3Q16798 604 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 CCDC60Q8IWA6 550 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 DENND6AQ8IWF6 608 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 CALML6Q8TD86 181 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 NARS2Q96I59 477 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 RBBP8Q99708 897 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 ING3Q9NXR8 418 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 CDYLQ9Y232 598 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 ADCY9O60503 1353 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 DYRK3O43781 588 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 COG2Q14746 738 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 TMA16Q96EY4 203 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 RNMTO43148 476 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 TSC22D2O75157 780 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 RRM2P31350 389 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 VSNL1P62760 191 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 SLFN13Q68D06 897 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 ARIH1Q9Y4X5 557 aaPredicted RBP14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 ZNF235Q14590 738 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 SCARA5Q6ZMJ2 495 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 TMEM35BQ8NCS4 154 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 ZNF507Q8TCN5 953 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 LRRC39Q96DD0 335 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 RNPEPQ9H4A4 650 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 BLMP54132 1417 aaPredicted RBP14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 ZNF699Q32M78 642 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 TRIM72Q6ZMU5 477 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 HDAC6Q9UBN7 1215 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 CSPG5O95196 566 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 UGP2Q16851 508 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 ESRP1Q6NXG1 681 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 WNT8AQ9H1J5 351 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 GPC5P78333 572 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 ZBTB38Q8NAP3 1195 aaPredicted RBP14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 PNMA3Q9UL41 463 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 RIMS2Q9UQ26 1411 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 TAF5LO75529 589 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 ALDH1A1P00352 501 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 DBNDD2Q9BQY9 259 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 TJP2Q9UDY2 1190 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 SPACA6W5XKT8 324 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 SERHL2Q9H4I8 314 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 PPCSQ9HAB8 311 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 SERHLQ9NQF3 203 aa14.68□□□□□ -0.06
CCDC88A-201ENST00000263630 CLCN6P51797 869 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 SUPT20HL1Q3ZLR7 823 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 CFAP99D6REC4 459 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 ADRM1Q16186 407 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 IFNL3Q8IZI9 196 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 BEST2Q8NFU1 509 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 GPKOWQ92917 476 aaPredicted RBP eCLIP14.67□□□□□ -0.062e-6■■□□□ 12.1
CCDC88A-201ENST00000263630 UNC45AQ9H3U1 944 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 SYNDIG1Q9H7V2 258 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 PCDHA7Q9UN72 937 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 SMG5Q9UPR3 1016 aaKnown RBP14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 USP17L12C9JPN9 530 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 USP17L21D6R901 530 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 IL6P05231 212 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 RALAP11233 206 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 HNMTP50135 292 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 ATP12AP54707 1039 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 ZNF496Q96IT1 587 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 IL1RAPL1Q9NZN1 696 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 KPNB1Q14974 876 aaKnown RBP14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 PCIF1Q9H4Z3 704 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 ZFATQ9P243 1243 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 CLIC2O15247 247 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 HSD17B4P51659 736 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 PDXDC2PQ6P474 469 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 POTEIP0CG38 1075 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 KRT31Q15323 416 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 RMND5BQ96G75 393 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 PDE9AO76083 593 aa14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 RNF26Q9BY78 433 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 MAP3K20Q9NYL2 800 aaKnown RBP14.67□□□□□ -0.06
CCDC88A-201ENST00000263630 RGS4P49798 205 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 ALDH18A1P54886 795 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 CNTN1Q12860 1018 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 VEPH1Q14D04 833 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 TAB1Q15750 504 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 PEG10Q86TG7 708 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 CNPY3Q9BT09 278 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 C19orf44Q9H6X5 657 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 TMEM63CQ9P1W3 806 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 USP1O94782 785 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 ATP5JP18859 108 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 IL12RB1P42701 662 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 ARMC6Q6NXE6 501 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 143.9 ms