RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 HERC4Q5GLZ8 1057 aaPredicted RBP21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 PADI6Q6TGC4 694 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 PPP4R3CPQ6ZMV5 832 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 ZBTB8OSQ8IWT0 167 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 CPB2Q96IY4 423 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 EIF2AQ9BY44 585 aaKnown RBP21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 C2orf40Q9H1Z8 148 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 PRMT7Q9NVM4 692 aaPredicted RBP21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 DNAJB4Q9UDY4 337 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 LRWD1Q9UFC0 647 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 A0A087WWV3 80 aa21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 LRRIQ4A6NIV6 560 aa21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 CLASP2O75122 1294 aaKnown RBP21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 DDHD2O94830 711 aa21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 RBM10P98175 930 aaKnown RBP21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 CBX2Q14781 532 aaPredicted RBP21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 PPP2R5AQ15172 486 aa21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 CDCA2Q69YH5 1023 aaPredicted RBP21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 SLC27A1Q6PCB7 646 aa21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 POTEGQ6S5H5 508 aa21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 PPFIBP1Q86W92 1011 aa21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 TMEM173Q86WV6 379 aaPredicted RBP21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 RNF135Q8IUD6 432 aa21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 HCN4Q9Y3Q4 1203 aa21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 HCFC2Q9Y5Z7 792 aa21.12■□□□□ 0.97
CCDC28A-203ENST00000617445 ARL5CA6NH57 179 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 NR1I2O75469 434 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 POMCP01189 267 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 CCT6AP40227 531 aaKnown RBP21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 ITIH3Q06033 890 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 PTGDRQ13258 359 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 CES5AQ6NT32 575 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 LLGL2Q6P1M3 1020 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 SYCE2Q6PIF2 218 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 MAEAQ7L5Y9 396 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 IGSF22Q8N9C0 903 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 FZD8Q9H461 694 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 GPRC5CQ9NQ84 441 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 DZANK1Q9NVP4 752 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 SSX2IPQ9Y2D8 614 aa21.11■□□□□ 0.97
CCDC28A-203ENST00000617445 TDRD15B5MCY1 1934 aaKnown RBP21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 NRP1O14786 923 aa21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 CA8P35219 290 aa21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 PRPHP41219 470 aa21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 NAMPTP43490 491 aa21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 TOB1P50616 345 aaPredicted RBP21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 AFF1P51825 1210 aaKnown RBP21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 COLGALT2Q8IYK4 626 aa21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 BCL7CQ8WUZ0 217 aaPredicted RBP21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 TMX3Q96JJ7 454 aa21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 NECTIN4Q96NY8 510 aa21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 GAD1Q99259 594 aa21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 EMILIN2Q9BXX0 1053 aa21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 RNF39Q9H2S5 420 aa21.1■□□□□ 0.97
CCDC28A-203ENST00000617445 FAM86C2PA6NEL3 165 aa21.09■□□□□ 0.97
CCDC28A-203ENST00000617445 DSC1Q08554 894 aa21.09■□□□□ 0.97
CCDC28A-203ENST00000617445 MAPK6Q16659 721 aa21.09■□□□□ 0.97
CCDC28A-203ENST00000617445 RILPL1Q5EBL4 403 aa21.09■□□□□ 0.97
CCDC28A-203ENST00000617445 KIFAP3Q92845 792 aa21.09■□□□□ 0.97
CCDC28A-203ENST00000617445 IFT74Q96LB3 600 aa21.09■□□□□ 0.97
CCDC28A-203ENST00000617445 ADAM7Q9H2U9 754 aa21.09■□□□□ 0.97
CCDC28A-203ENST00000617445 HES2Q9Y543 173 aa21.09■□□□□ 0.97
CCDC28A-203ENST00000617445 PCDHB6Q9Y5E3 794 aa21.09■□□□□ 0.97
CCDC28A-203ENST00000617445 N4BP3O15049 544 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 B4GALT5O43286 388 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 B4GALT3O60512 393 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 MLH1P40692 756 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 EFNA5P52803 228 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 NBR1Q14596 966 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 PTPN14Q15678 1187 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 KRT79Q5XKE5 535 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 DEPTORQ8TB45 409 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 COLEC11Q9BWP8 271 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 BHMT2Q9H2M3 363 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 MRPL17Q9NRX2 175 aaKnown RBP21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 MUTYHQ9UIF7 546 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 KIAA1024Q9UPX6 916 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 DNM3Q9UQ16 869 aa21.08■□□□□ 0.97
CCDC28A-203ENST00000617445 ACKR2O00590 384 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 NPTXRO95502 500 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 SOD2P04179 222 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 MTHFRP42898 656 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 OR1G1P47890 313 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 MCTP1Q6DN14 999 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 DTHD1Q6ZMT9 781 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 KCTD17Q8N5Z5 321 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 SNX29Q8TEQ0 813 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 SLC22A17Q8WUG5 538 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 EDAQ92838 391 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 RPGRIP1Q96KN7 1286 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 RIPOR3Q96MK2 946 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 ADPGKQ9BRR6 497 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 APOL6Q9BWW8 343 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 VN1R3Q9BXE9 311 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 NXF3Q9H4D5 531 aaKnown RBP21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 NR2E1Q9Y466 385 aa21.07■□□□□ 0.96
CCDC28A-203ENST00000617445 H3BQV1 296 aa21.06■□□□□ 0.96
CCDC28A-203ENST00000617445 LILRB3O75022 631 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms