RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 IQSEC1Q6DN90 963 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 LOC285556D6RIA3 1793 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 KAT6AQ92794 2004 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 PARP14Q460N5 1801 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 SLC7A5Q01650 507 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 KIZQ2M2Z5 673 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 KIAA0895Q8NCT3 520 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 IFT81Q8WYA0 676 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 THOC1Q96FV9 657 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 APOL6Q9BWW8 343 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 RNF19AQ9NV58 838 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 ADGRA2Q96PE1 1338 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 MACROD2A1Z1Q3 448 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 DENND3A2RUS2 1198 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 MMP3P08254 477 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 ZNF865P0CJ78 1059 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 SMTNP53814 917 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 NFX1Q12986 1120 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 MORC3Q14149 939 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 CCDC181Q5TID7 509 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 MLKLQ8NB16 471 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 RNF169Q8NCN4 708 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 SGSM3Q96HU1 749 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 TSG101Q99816 390 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 HMX1Q9NP08 348 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 LAMA2P24043 3122 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 PLXNB2O15031 1838 aa9.42□□□□□ -0.9
LIMCH1-209ENST00000509277 GOLGA6BA6NDN3 693 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 HNRNPDLO14979 420 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 ARHGAP6O43182 974 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 HSPA1AP0DMV8 641 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 HSPA1BP0DMV9 641 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 ICAM3P32942 547 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 DNM2P50570 870 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 GHRHRQ02643 423 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 MAATS1Q7Z4T9 603 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 SRGAP1Q7Z6B7 1085 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 C4orf19Q8IY42 314 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 NEK9Q8TD19 979 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 PRPF31Q8WWY3 499 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 DNAJC19Q96DA6 116 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 CABS1Q96KC9 395 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 FAM84AQ96KN4 292 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 C7orf25Q9BPX7 421 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 CAPS2Q9BXY5 557 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 YIPF3Q9GZM5 350 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 GBP3Q9H0R5 595 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 SUCLA2Q9P2R7 463 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 TUBE1Q9UJT0 475 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 DIS3Q9Y2L1 958 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 FRMPD4Q14CM0 1322 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 KLRC4O43908 158 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 HMGCRP04035 888 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 TRIM65Q6PJ69 517 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 SH3RF1Q7Z6J0 888 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 SAAL1Q96ER3 474 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 UNC93B1Q9H1C4 597 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 STK24Q9Y6E0 443 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 EVPLQ92817 2033 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 NFASCO94856 1347 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 AP1G2O75843 785 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 EZRP15311 586 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 ELF1P32519 619 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 BRD3Q15059 726 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 KCNA10Q16322 511 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 ANKRD40Q6AI12 368 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 C1orf186Q6ZWK4 172 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 HAUS6Q7Z4H7 955 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 KIAA1328Q86T90 577 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 BSNDQ8WZ55 320 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 CCDC127Q96BQ5 260 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 LBHD1Q9BQE6 289 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 TRIM10Q9UDY6 481 aa9.41□□□□□ -0.9
LIMCH1-209ENST00000509277 FAM237AA0A1B0GTK4 181 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 N4BP3O15049 544 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 CAVIN2O95810 425 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 ABL1P00519 1130 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 ASGR1P07306 291 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 CYP2C9P11712 490 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 CPT1AP50416 773 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 NLRP11P59045 1033 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 PSMD2Q13200 908 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 GRIK4Q16099 956 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 TSR1Q2NL82 804 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 BEND6Q5SZJ8 279 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 HS2ST1Q7LGA3 356 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 TAX1BP1Q86VP1 789 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 CEP112Q8N8E3 955 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 FAM71BQ8TC56 605 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 DNAJB3Q8WWF6 145 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 SPDL1Q96EA4 605 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 TRIM6Q9C030 488 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 MRFAP1Q9Y605 127 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 PHLPP2Q6ZVD8 1323 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 EXOC3O60645 756 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 DGAT1O75907 488 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 CXCR5P32302 372 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 SEC24CP53992 1094 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 STRN3Q13033 797 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms