RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 SKIP12755 728 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 KCNA3P22001 575 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 ADCY7P51828 1080 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 MKRN3Q13064 507 aaKnown RBP14.08□□□□□ -0.16
NUP54-201ENST00000264883 MTA1Q13330 715 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 PPP2R5EQ16537 467 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 ANKRD42Q8N9B4 389 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 SH3TC2Q8TF17 1288 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 DYNLL2Q96FJ2 89 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 TIPINQ9BVW5 301 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 MYLK2Q9H1R3 596 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 GANQ9H2C0 597 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 VCX3BQ9H321 246 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 OCEL1Q9H607 264 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 RIOX1Q9H6W3 641 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 VCX3AQ9NNX9 186 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 MLXIPLQ9NP71 852 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 COL11A2P13942 1736 aaPredicted RBP14.08□□□□□ -0.16
NUP54-201ENST00000264883 FAM187AA6NFU0 413 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 LMNAP02545 664 aaKnown RBP14.08□□□□□ -0.16
NUP54-201ENST00000264883 VHLP40337 213 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 SERPINB4P48594 390 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 NOVP48745 357 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 NPEPPSP55786 919 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 ACVR2BQ13705 512 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 SETDB1Q15047 1291 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 CLUL1Q15846 466 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 KIAA1755Q5JYT7 1200 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 ACBD5Q5T8D3 534 aaPredicted RBP14.08□□□□□ -0.16
NUP54-201ENST00000264883 MFSD5Q6N075 450 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 CGB2Q6NT52 195 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 C16orf86Q6ZW13 317 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 OTUD6AQ7L8S5 288 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 SLFN11Q7Z7L1 901 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 DNAAF5Q86Y56 855 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 GDAP1Q8TB36 358 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 MIPOL1Q8TD10 442 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 INPP5DQ92835 1189 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 PTPRN2Q92932 1015 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 DNAJC19Q96DA6 116 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 TGS1Q96RS0 853 aaKnown RBP14.08□□□□□ -0.16
NUP54-201ENST00000264883 STOML1Q9UBI4 398 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 HAO1Q9UJM8 370 aa14.08□□□□□ -0.16
NUP54-201ENST00000264883 ATP9AO75110 1047 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 ENTPD5O75356 428 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 FGFR4P22455 802 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 TARSP26639 723 aaKnown RBP14.07□□□□□ -0.16
NUP54-201ENST00000264883 PTK2Q05397 1052 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 NT5DC3Q86UY8 548 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 VPS36Q86VN1 386 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 LCA5Q86VQ0 697 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 LRRC8CQ8TDW0 803 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 GLG1Q92896 1179 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 DCLRE1BQ9H816 532 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 KCNK9Q9NPC2 374 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 BIN2Q9UBW5 565 aaPredicted RBP14.07□□□□□ -0.16
NUP54-201ENST00000264883 TTC7AQ9ULT0 858 aaPredicted RBP14.07□□□□□ -0.16
NUP54-201ENST00000264883 DIS3Q9Y2L1 958 aaKnown RBP14.07□□□□□ -0.16
NUP54-201ENST00000264883 SNED1Q8TER0 1413 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 MROH7Q68CQ1 1323 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 MAGEA13PA6NCF6 341 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 KIAA0391O15091 583 aaKnown RBP14.07□□□□□ -0.16
NUP54-201ENST00000264883 RIPK2O43353 540 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 GFPT2O94808 682 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 PENKP01210 267 aaPredicted RBP14.07□□□□□ -0.16
NUP54-201ENST00000264883 COPB2P35606 906 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 SESN3P58005 492 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 GPSM2P81274 684 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 SH3RF3Q8TEJ3 882 aaPredicted RBP14.07□□□□□ -0.16
NUP54-201ENST00000264883 ARHGEF2Q92974 986 aaKnown RBP14.07□□□□□ -0.16
NUP54-201ENST00000264883 HES6Q96HZ4 224 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 EYA3Q99504 573 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 TBC1D10AQ9BXI6 508 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 MTRF1LQ9UGC7 380 aaKnown RBP14.07□□□□□ -0.16
NUP54-201ENST00000264883 USP20Q9Y2K6 914 aa14.07□□□□□ -0.16
NUP54-201ENST00000264883 SIGLEC16A6NMB1 481 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 CETN3O15182 167 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 GOLGA8HP0CJ92 632 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 CREB1P16220 341 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 PRKCIP41743 596 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 DRG2P55039 364 aaKnown RBP14.06□□□□□ -0.16
NUP54-201ENST00000264883 PRPF4BQ13523 1007 aaKnown RBP14.06□□□□□ -0.16
NUP54-201ENST00000264883 MTFR1Q15390 333 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 CCDC6Q16204 474 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 ASPRV1Q53RT3 343 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 VSTM1Q6UX27 236 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 ZNF571Q7Z3V5 609 aaPredicted RBP14.06□□□□□ -0.16
NUP54-201ENST00000264883 ADAT2Q7Z6V5 191 aaKnown RBP14.06□□□□□ -0.16
NUP54-201ENST00000264883 JAMLQ86YT9 394 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 MYLK4Q86YV6 388 aaPredicted RBP14.06□□□□□ -0.16
NUP54-201ENST00000264883 CCNJLQ8IV13 435 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 ARHGAP18Q8N392 663 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 ERP27Q96DN0 273 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 DENND2DQ9H6A0 471 aaPredicted RBP14.06□□□□□ -0.16
NUP54-201ENST00000264883 GALNT8Q9NY28 637 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 PDP2Q9P2J9 529 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 RASAL2Q9UJF2 1139 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 NAGPAQ9UK23 515 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 PITPNM2Q9BZ72 1349 aa14.06□□□□□ -0.16
NUP54-201ENST00000264883 PLCG2P16885 1265 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms